Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Gm4081-201ENSMUST00000195287 1838 ntBASIC13.37□□□□□ -0.27
Sox1P53783 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Sox1P53783 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Ifna15-201ENSMUST00000102809 573 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sox1P53783 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Gm12380-201ENSMUST00000119012 544 ntBASIC13.37□□□□□ -0.27
Sox1P53783 Gm6039-201ENSMUST00000121667 1250 ntBASIC13.37□□□□□ -0.27
Sox1P53783 Gm12628-201ENSMUST00000122193 382 ntBASIC13.37□□□□□ -0.27
Sox1P53783 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
Sox1P53783 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC13.37□□□□□ -0.27
Sox1P53783 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Sox1P53783 CT030637.1-201ENSMUST00000228016 669 ntBASIC13.37□□□□□ -0.27
Sox1P53783 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Sox1P53783 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Miga1-204ENSMUST00000199334 4024 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Sox1P53783 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
Sox1P53783 Abhd6-201ENSMUST00000026313 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Gm45630-201ENSMUST00000210243 1911 ntBASIC13.37□□□□□ -0.27
Sox1P53783 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Sox1P53783 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Camkk2-201ENSMUST00000111668 4861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
Sox1P53783 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Srsf5-202ENSMUST00000110351 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC13.36□□□□□ -0.27
Sox1P53783 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Gm37728-201ENSMUST00000195025 2292 ntBASIC13.36□□□□□ -0.27
Sox1P53783 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Sox1P53783 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC13.36□□□□□ -0.27
Sox1P53783 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC13.36□□□□□ -0.27
Sox1P53783 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sox1P53783 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC13.36□□□□□ -0.27
Sox1P53783 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC13.36□□□□□ -0.27
Sox1P53783 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Sox1P53783 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Sox1P53783 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox1P53783 Rassf5-205ENSMUST00000212202 958 ntTSL 5 BASIC13.36□□□□□ -0.27
Sox1P53783 Gm3318-201ENSMUST00000217604 1183 ntBASIC13.36□□□□□ -0.27
Sox1P53783 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Sox1P53783 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.36□□□□□ -0.27
Sox1P53783 Gm8337-201ENSMUST00000187358 1938 ntBASIC13.36□□□□□ -0.27
Sox1P53783 Slc52a3-202ENSMUST00000109858 2094 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Gnao1-203ENSMUST00000125716 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Sox1P53783 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sox1P53783 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sox1P53783 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC13.35□□□□□ -0.27
Sox1P53783 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Clcf1-201ENSMUST00000046506 1847 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Hnrnpul1-201ENSMUST00000043765 3354 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.35□□□□□ -0.27
Sox1P53783 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Mir6923-201ENSMUST00000184592 72 ntBASIC13.35□□□□□ -0.27
Sox1P53783 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC13.35□□□□□ -0.27
Sox1P53783 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.35□□□□□ -0.27
Sox1P53783 CT009713.8-202ENSMUST00000224732 385 ntBASIC13.35□□□□□ -0.27
Sox1P53783 Wfdc21-201ENSMUST00000070832 434 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Gm10076-201ENSMUST00000073238 384 ntBASIC13.35□□□□□ -0.27
Sox1P53783 Cpeb3-210ENSMUST00000136286 5260 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sox1P53783 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Gpt-201ENSMUST00000023203 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Sox1P53783 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Sox1P53783 Trp53bp2-201ENSMUST00000117245 4361 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms