Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col2a1P28481 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Col2a1P28481 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Col2a1P28481 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Col2a1P28481 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Col2a1P28481 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col2a1P28481 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col2a1P28481 Gm5385-201ENSMUST00000118988 1559 ntBASIC14.72□□□□□ -0.05
Col2a1P28481 Endov-203ENSMUST00000106245 5126 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col2a1P28481 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Asb17os-201ENSMUST00000156292 496 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Rn7s1-201ENSMUST00000174924 300 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Rn7s2-201ENSMUST00000175032 300 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Gm26461-201ENSMUST00000175064 290 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Gm45691-201ENSMUST00000206905 1120 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Gm44967-201ENSMUST00000207047 631 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Gm18041-201ENSMUST00000218210 618 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Mir433-201ENSMUST00000093564 124 ntBASIC14.71□□□□□ -0.05
Col2a1P28481 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.05
Col2a1P28481 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.71□□□□□ -0.05
Col2a1P28481 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Slc38a7-204ENSMUST00000212270 3315 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Kcnc2-201ENSMUST00000092175 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col2a1P28481 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
Col2a1P28481 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col2a1P28481 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col2a1P28481 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col2a1P28481 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col2a1P28481 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.71□□□□□ -0.06
Col2a1P28481 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC14.71□□□□□ -0.06
Col2a1P28481 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col2a1P28481 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
Col2a1P28481 Zmynd15-201ENSMUST00000039093 2804 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm11439-201ENSMUST00000118598 409 ntBASIC14.7□□□□□ -0.06
Col2a1P28481 Gm14017-201ENSMUST00000121934 386 ntBASIC14.7□□□□□ -0.06
Col2a1P28481 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm4577-201ENSMUST00000135203 716 ntTSL 3 BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Ly6g5b-202ENSMUST00000172854 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Mir3102-201ENSMUST00000175555 104 ntBASIC14.7□□□□□ -0.06
Col2a1P28481 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 CT030182.1-201ENSMUST00000225935 533 ntBASIC14.7□□□□□ -0.06
Col2a1P28481 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Keap1-202ENSMUST00000164812 3614 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Ucp3-201ENSMUST00000032958 2448 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
Col2a1P28481 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Suv39h1-201ENSMUST00000115636 2707 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Col2a1P28481 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col2a1P28481 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
Col2a1P28481 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col2a1P28481 9430021M05Rik-201ENSMUST00000145985 1201 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col2a1P28481 Gm23119-201ENSMUST00000158610 140 ntBASIC14.69□□□□□ -0.06
Col2a1P28481 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col2a1P28481 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms