Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Syt2-204ENSMUST00000188842 3386 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Eif2b2-201ENSMUST00000004910 1605 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Cdx1P18111 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Nsun7-204ENSMUST00000202994 3632 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Cdx1P18111 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC10.65□□□□□ -0.7
Cdx1P18111 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC10.65□□□□□ -0.7
Cdx1P18111 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gm14767-201ENSMUST00000121559 586 ntBASIC10.65□□□□□ -0.7
Cdx1P18111 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC10.65□□□□□ -0.7
Cdx1P18111 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gm6888-201ENSMUST00000221983 706 ntBASIC10.65□□□□□ -0.7
Cdx1P18111 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Cdx1P18111 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Arfgap1-203ENSMUST00000108860 2326 ntAPPRIS ALT2 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Tnk2-205ENSMUST00000115124 4424 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC10.65□□□□□ -0.7
Cdx1P18111 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
Cdx1P18111 AC131743.5-201ENSMUST00000220775 1618 ntBASIC10.65□□□□□ -0.7
Cdx1P18111 Cbln3-201ENSMUST00000063871 4866 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cdx1P18111 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cdx1P18111 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cdx1P18111 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC10.65□□□□□ -0.71
Cdx1P18111 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Cdx1P18111 AC124577.2-201ENSMUST00000217413 2420 ntBASIC10.65□□□□□ -0.71
Cdx1P18111 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.71
Cdx1P18111 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC10.65□□□□□ -0.71
Cdx1P18111 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cdx1P18111 Pde4d-203ENSMUST00000117420 1955 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
Cdx1P18111 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC10.65□□□□□ -0.71
Cdx1P18111 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC10.65□□□□□ -0.71
Cdx1P18111 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Cdx1P18111 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Cd72-201ENSMUST00000030179 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Gm37513-201ENSMUST00000194830 2268 ntBASIC10.64□□□□□ -0.71
Cdx1P18111 Gm38378-201ENSMUST00000195153 2268 ntBASIC10.64□□□□□ -0.71
Cdx1P18111 Sgtb-201ENSMUST00000044385 3048 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Kyat1-205ENSMUST00000113662 1850 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
Cdx1P18111 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Cdx1P18111 AC211878.3-201ENSMUST00000222629 2018 ntBASIC10.64□□□□□ -0.71
Cdx1P18111 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC10.64□□□□□ -0.71
Cdx1P18111 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC10.64□□□□□ -0.71
Cdx1P18111 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC10.64□□□□□ -0.71
Cdx1P18111 Gm5745-201ENSMUST00000183748 313 ntBASIC10.64□□□□□ -0.71
Cdx1P18111 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC10.64□□□□□ -0.71
Cdx1P18111 AC140375.2-201ENSMUST00000225283 584 ntBASIC10.64□□□□□ -0.71
Cdx1P18111 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC10.64□□□□□ -0.71
Cdx1P18111 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Cdx1P18111 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
Cdx1P18111 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms