Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Kbtbd6-202ENSMUST00000226192 2984 ntAPPRIS P2 BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Hnrnpc-211ENSMUST00000228748 1691 ntAPPRIS P5 BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Ifi47-201ENSMUST00000046704 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Aspg-201ENSMUST00000079400 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC14.52□□□□□ -0.08
Prpf40aQ9R1C7 Tmem53-202ENSMUST00000106433 913 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm15678-201ENSMUST00000117573 960 ntBASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm13716-201ENSMUST00000126401 808 ntTSL 5 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm23984-201ENSMUST00000157139 203 ntBASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm8369-204ENSMUST00000188633 1227 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm6983-201ENSMUST00000214912 628 ntBASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm7446-201ENSMUST00000221035 1240 ntBASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 A730061H03Rik-201ENSMUST00000066106 465 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Prpf40aQ9R1C7 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Zyx-202ENSMUST00000164375 3188 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Atg16l1-203ENSMUST00000113190 3102 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Uckl1-201ENSMUST00000057816 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Akirin1-ps-201ENSMUST00000119676 458 ntBASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm15429-201ENSMUST00000151268 798 ntBASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm44397-201ENSMUST00000195950 113 ntBASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Il13-201ENSMUST00000020650 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 AC073947.2-201ENSMUST00000215888 1130 ntBASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gm8973-201ENSMUST00000079818 315 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Prss36-201ENSMUST00000094026 3061 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Polrmt-202ENSMUST00000159016 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Noto-201ENSMUST00000089578 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 5031415H12Rik-201ENSMUST00000181546 2481 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Chpf2-201ENSMUST00000088295 5371 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
Prpf40aQ9R1C7 Creb3l3-201ENSMUST00000117422 2294 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Malt1-202ENSMUST00000224056 4028 ntAPPRIS ALT2 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 1700037H04Rik-202ENSMUST00000103188 1241 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm13689-201ENSMUST00000119360 685 ntBASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm28911-201ENSMUST00000188837 117 ntBASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm6745-201ENSMUST00000199216 526 ntBASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm43371-201ENSMUST00000202838 1031 ntBASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Klk1b7-ps-201ENSMUST00000078897 448 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Ecscr-201ENSMUST00000097618 1114 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Arhgap11a-203ENSMUST00000110948 4878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Gm853-201ENSMUST00000023884 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Prpf40aQ9R1C7 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms