Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC10.68□□□□□ -0.7
Cdx1P18111 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Mzf1-205ENSMUST00000182515 3340 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
Cdx1P18111 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Ercc5-201ENSMUST00000027214 3907 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 AC124751.1-201ENSMUST00000222716 1408 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Ppp1r10-202ENSMUST00000087211 4255 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Cdx1P18111 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Kdm2b-204ENSMUST00000118027 5062 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Cdx1P18111 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Def8-203ENSMUST00000093049 1909 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Gm14042-201ENSMUST00000120139 833 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Gm15483-201ENSMUST00000120338 456 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Tm7sf2-209ENSMUST00000161528 732 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Gm27989-201ENSMUST00000184721 107 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Cdx1P18111 Wdr13-205ENSMUST00000130832 4374 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Gm6157-201ENSMUST00000199935 1897 ntBASIC10.67□□□□□ -0.7
Cdx1P18111 Htr2c-207ENSMUST00000156697 4654 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Mab21l3-202ENSMUST00000118411 2700 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Glis3-202ENSMUST00000112612 3016 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC10.67□□□□□ -0.7
Cdx1P18111 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cdx1P18111 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 AC154725.1-201ENSMUST00000224826 1961 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 H3f3b-202ENSMUST00000106454 2514 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Guca1b-201ENSMUST00000024774 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm9544-201ENSMUST00000223349 2482 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Krt74-201ENSMUST00000088018 1648 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
Cdx1P18111 Trpv4-202ENSMUST00000112217 2436 ntTSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ercc4-201ENSMUST00000023206 3480 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 4930429H19Rik-201ENSMUST00000205260 1818 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Pltp-201ENSMUST00000059954 1809 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm44806-201ENSMUST00000205574 2303 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Cdx1P18111 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Cdx1P18111 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm6539-201ENSMUST00000119157 1064 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Gm12151-201ENSMUST00000121374 290 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC10.66□□□□□ -0.7
Cdx1P18111 E130218I03Rik-206ENSMUST00000135228 544 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm27920-201ENSMUST00000183953 96 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Gm8597-201ENSMUST00000191525 1109 ntBASIC10.66□□□□□ -0.7
Cdx1P18111 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Clec4g-202ENSMUST00000062037 1242 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Serpina16-201ENSMUST00000095451 1257 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm14685-202ENSMUST00000179117 2773 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Gm28539-201ENSMUST00000190050 2982 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cdx1P18111 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cdx1P18111 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 46.6 ms