Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lamc2-203ENSMUST00000185356 4916 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Ypel3-203ENSMUST00000106357 1594 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Samd4-206ENSMUST00000137543 6874 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Myh1-202ENSMUST00000075734 6012 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Wdr19-204ENSMUST00000203653 6279 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
Hmgb3O54879 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 1810030O07Rik-201ENSMUST00000060108 2699 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 AC125108.1-201ENSMUST00000218986 2330 ntBASIC10.89□□□□□ -0.67
Hmgb3O54879 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Pcdhga6-201ENSMUST00000195823 4733 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Hmgb3O54879 Ctbs-201ENSMUST00000029840 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 9030624J02Rik-202ENSMUST00000059390 5097 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Arhgap22-202ENSMUST00000111956 2596 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Gm42934-201ENSMUST00000196920 1345 ntBASIC10.88□□□□□ -0.67
Hmgb3O54879 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Eef2k-201ENSMUST00000047875 6580 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Mettl11b-201ENSMUST00000159679 1790 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Lrat-201ENSMUST00000029632 5351 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Gm28942-201ENSMUST00000186334 365 ntTSL 3 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Tspyl-ps-201ENSMUST00000220692 1117 ntBASIC10.88□□□□□ -0.67
Hmgb3O54879 AC138767.1-201ENSMUST00000222661 415 ntBASIC10.88□□□□□ -0.67
Hmgb3O54879 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Ghsr-201ENSMUST00000057186 4433 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Nrp2-202ENSMUST00000063594 6342 ntAPPRIS P4 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Zmynd15-202ENSMUST00000092958 2100 ntAPPRIS ALT2 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 4931414P19Rik-201ENSMUST00000022786 2670 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Madd-204ENSMUST00000077941 5990 ntAPPRIS ALT2 TSL 2 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Madd-205ENSMUST00000099723 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC10.88□□□□□ -0.67
Hmgb3O54879 Rnf17-202ENSMUST00000223627 2077 ntBASIC10.88□□□□□ -0.67
Hmgb3O54879 Gm5989-201ENSMUST00000096092 2077 ntBASIC10.88□□□□□ -0.67
Hmgb3O54879 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.67
Hmgb3O54879 Bsn-201ENSMUST00000035208 15938 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Nav1-202ENSMUST00000067414 13117 ntAPPRIS P2 TSL 5 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 5430419D17Rik-203ENSMUST00000208921 7948 ntAPPRIS P1 TSL 5 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC10.87□□□□□ -0.67
Hmgb3O54879 AA619741-201ENSMUST00000195095 646 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 4930502C17Rik-201ENSMUST00000200282 948 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Gm20553-201ENSMUST00000204205 844 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 AC159295.1-201ENSMUST00000225326 940 ntBASIC10.87□□□□□ -0.67
Hmgb3O54879 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Rbfox2-203ENSMUST00000166610 6573 ntAPPRIS P2 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC10.87□□□□□ -0.67
Hmgb3O54879 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC10.87□□□□□ -0.67
Hmgb3O54879 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC10.87□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 224.6 ms