Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Scn11aQ9R053 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Scn11aQ9R053 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.89■■□□□ 1.74
Scn11aQ9R053 Lrrc59-201ENSMUST00000021239 2837 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Scn11aQ9R053 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Scn11aQ9R053 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Scn11aQ9R053 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Scn11aQ9R053 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Scn11aQ9R053 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn11aQ9R053 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn11aQ9R053 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn11aQ9R053 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn11aQ9R053 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Scn11aQ9R053 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Gm7417-201ENSMUST00000192950 473 ntBASIC25.85■■□□□ 1.73
Scn11aQ9R053 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
Scn11aQ9R053 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
Scn11aQ9R053 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Scn11aQ9R053 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
Scn11aQ9R053 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scn11aQ9R053 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC25.84■■□□□ 1.73
Scn11aQ9R053 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scn11aQ9R053 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Scn11aQ9R053 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Scn11aQ9R053 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
Scn11aQ9R053 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Scn11aQ9R053 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn11aQ9R053 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn11aQ9R053 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Scn11aQ9R053 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn11aQ9R053 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn11aQ9R053 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Scn11aQ9R053 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Scn11aQ9R053 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Scn11aQ9R053 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Scn11aQ9R053 Gm9847-201ENSMUST00000052528 599 ntBASIC25.79■■□□□ 1.72
Scn11aQ9R053 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
Scn11aQ9R053 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC25.78■■□□□ 1.72
Scn11aQ9R053 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Scn11aQ9R053 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Scn11aQ9R053 Gm10620-201ENSMUST00000098379 1332 ntBASIC25.78■■□□□ 1.72
Scn11aQ9R053 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Scn11aQ9R053 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Scn11aQ9R053 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC25.76■■□□□ 1.71
Scn11aQ9R053 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC25.76■■□□□ 1.71
Scn11aQ9R053 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC25.76■■□□□ 1.71
Scn11aQ9R053 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
Scn11aQ9R053 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC25.76■■□□□ 1.71
Scn11aQ9R053 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC25.76■■□□□ 1.71
Scn11aQ9R053 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Scn11aQ9R053 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Scn11aQ9R053 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Scn11aQ9R053 Il17rd-202ENSMUST00000223942 2186 ntBASIC25.75■■□□□ 1.71
Scn11aQ9R053 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Scn11aQ9R053 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Scn11aQ9R053 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Scn11aQ9R053 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
Scn11aQ9R053 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC25.74■■□□□ 1.71
Scn11aQ9R053 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC25.74■■□□□ 1.71
Scn11aQ9R053 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC25.73■■□□□ 1.71
Scn11aQ9R053 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
Scn11aQ9R053 AC158990.1-201ENSMUST00000221450 2016 ntBASIC25.72■■□□□ 1.71
Scn11aQ9R053 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
Scn11aQ9R053 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Scn11aQ9R053 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Scn11aQ9R053 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Scn11aQ9R053 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC25.72■■□□□ 1.71
Scn11aQ9R053 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Scn11aQ9R053 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms