Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Vps39Q8R5L3 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Vps39Q8R5L3 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC21.33■■□□□ 1
Vps39Q8R5L3 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC21.32■■□□□ 1
Vps39Q8R5L3 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps39Q8R5L3 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Vps39Q8R5L3 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Vps39Q8R5L3 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.32■■□□□ 1
Vps39Q8R5L3 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps39Q8R5L3 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Vps39Q8R5L3 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps39Q8R5L3 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Vps39Q8R5L3 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Vps39Q8R5L3 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Gm11175-201ENSMUST00000116172 543 ntBASIC21.31■■□□□ 1
Vps39Q8R5L3 Gm14523-201ENSMUST00000117260 558 ntBASIC21.31■■□□□ 1
Vps39Q8R5L3 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.31■■□□□ 1
Vps39Q8R5L3 Gm27502-201ENSMUST00000183495 199 ntBASIC21.31■■□□□ 1
Vps39Q8R5L3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21.31■■□□□ 1
Vps39Q8R5L3 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
Vps39Q8R5L3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Vps39Q8R5L3 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC21.3■■□□□ 1
Vps39Q8R5L3 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Vps39Q8R5L3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Vps39Q8R5L3 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC21.29■■□□□ 1
Vps39Q8R5L3 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC21.29■■□□□ 1
Vps39Q8R5L3 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC21.29■■□□□ 1
Vps39Q8R5L3 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Vps39Q8R5L3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.28■■□□□ 1
Vps39Q8R5L3 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC21.28■■□□□ 1
Vps39Q8R5L3 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC21.28■■□□□ 1
Vps39Q8R5L3 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.28■■□□□ 1
Vps39Q8R5L3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Vps39Q8R5L3 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
Vps39Q8R5L3 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps39Q8R5L3 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC21.27■■□□□ 1
Vps39Q8R5L3 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Vps39Q8R5L3 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Gm37415-201ENSMUST00000192265 2054 ntBASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Gm7332-201ENSMUST00000118351 454 ntBASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.26■□□□□ 0.99
Vps39Q8R5L3 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Vps39Q8R5L3 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Vps39Q8R5L3 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps39Q8R5L3 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
Vps39Q8R5L3 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.23■□□□□ 0.99
Vps39Q8R5L3 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.23■□□□□ 0.99
Vps39Q8R5L3 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Vps39Q8R5L3 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC21.23■□□□□ 0.99
Vps39Q8R5L3 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Vps39Q8R5L3 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Mir6538-201ENSMUST00000183713 110 ntBASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Vps39Q8R5L3 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms