Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC23.91■■□□□ 1.42
Ushbp1Q8R370 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Gm42501-201ENSMUST00000200220 1026 ntBASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
Ushbp1Q8R370 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC23.89■■□□□ 1.42
Ushbp1Q8R370 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Ushbp1Q8R370 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
Ushbp1Q8R370 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
Ushbp1Q8R370 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Dmtn-209ENSMUST00000228295 2572 ntBASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Ushbp1Q8R370 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Gm9959-201ENSMUST00000068277 390 ntBASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC23.87■■□□□ 1.41
Ushbp1Q8R370 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
Ushbp1Q8R370 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ushbp1Q8R370 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Ushbp1Q8R370 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC23.86■■□□□ 1.41
Ushbp1Q8R370 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ushbp1Q8R370 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC23.85■■□□□ 1.41
Ushbp1Q8R370 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Ushbp1Q8R370 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC23.85■■□□□ 1.41
Ushbp1Q8R370 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
Ushbp1Q8R370 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Ushbp1Q8R370 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Ushbp1Q8R370 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Ushbp1Q8R370 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.4
Ushbp1Q8R370 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ushbp1Q8R370 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC23.82■■□□□ 1.4
Ushbp1Q8R370 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ushbp1Q8R370 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Vegfb-201ENSMUST00000025914 1281 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ushbp1Q8R370 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ushbp1Q8R370 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ushbp1Q8R370 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ushbp1Q8R370 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Ushbp1Q8R370 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ushbp1Q8R370 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ushbp1Q8R370 Gm18755-201ENSMUST00000218030 1099 ntBASIC23.79■■□□□ 1.4
Ushbp1Q8R370 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ushbp1Q8R370 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ushbp1Q8R370 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ushbp1Q8R370 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ushbp1Q8R370 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
Ushbp1Q8R370 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC23.78■■□□□ 1.4
Ushbp1Q8R370 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ushbp1Q8R370 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ushbp1Q8R370 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 76,532 protein–RNA pairs in 147.9 ms