Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Usp40Q8BWR4 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC29.65■■■□□ 2.34
Usp40Q8BWR4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
Usp40Q8BWR4 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Gm21956-201ENSMUST00000179946 522 ntBASIC29.64■■■□□ 2.34
Usp40Q8BWR4 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Gm9847-201ENSMUST00000052528 599 ntBASIC29.64■■■□□ 2.34
Usp40Q8BWR4 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC29.64■■■□□ 2.33
Usp40Q8BWR4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Usp40Q8BWR4 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Gm13241-201ENSMUST00000094493 780 ntBASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Usp40Q8BWR4 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC29.61■■■□□ 2.33
Usp40Q8BWR4 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC29.61■■■□□ 2.33
Usp40Q8BWR4 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC29.61■■■□□ 2.33
Usp40Q8BWR4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Usp40Q8BWR4 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp40Q8BWR4 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp40Q8BWR4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC29.6■■■□□ 2.33
Usp40Q8BWR4 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp40Q8BWR4 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Usp40Q8BWR4 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 Hnrnpab-202ENSMUST00000101249 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Usp40Q8BWR4 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Usp40Q8BWR4 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC29.58■■■□□ 2.33
Usp40Q8BWR4 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Usp40Q8BWR4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Usp40Q8BWR4 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC29.58■■■□□ 2.33
Usp40Q8BWR4 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
Usp40Q8BWR4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC29.57■■■□□ 2.32
Usp40Q8BWR4 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Usp40Q8BWR4 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
Usp40Q8BWR4 Gm43034-201ENSMUST00000198678 1364 ntBASIC29.57■■■□□ 2.32
Usp40Q8BWR4 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Usp40Q8BWR4 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Usp40Q8BWR4 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Usp40Q8BWR4 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC29.56■■■□□ 2.32
Usp40Q8BWR4 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC29.56■■■□□ 2.32
Usp40Q8BWR4 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp40Q8BWR4 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp40Q8BWR4 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC29.55■■■□□ 2.32
Usp40Q8BWR4 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp40Q8BWR4 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC29.54■■■□□ 2.32
Usp40Q8BWR4 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Usp40Q8BWR4 Il17rd-202ENSMUST00000223942 2186 ntBASIC29.54■■■□□ 2.32
Usp40Q8BWR4 AC158990.1-201ENSMUST00000221450 2016 ntBASIC29.54■■■□□ 2.32
Usp40Q8BWR4 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Usp40Q8BWR4 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
Usp40Q8BWR4 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC29.53■■■□□ 2.32
Usp40Q8BWR4 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Usp40Q8BWR4 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Gm12922-201ENSMUST00000120626 809 ntBASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
Usp40Q8BWR4 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Usp40Q8BWR4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 H3f3aos-201ENSMUST00000097448 2905 ntBASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC29.5■■■□□ 2.31
Usp40Q8BWR4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Usp40Q8BWR4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC29.49■■■□□ 2.31
Usp40Q8BWR4 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC29.49■■■□□ 2.31
Usp40Q8BWR4 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Usp40Q8BWR4 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Usp40Q8BWR4 Adora2b-201ENSMUST00000018644 1845 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Usp40Q8BWR4 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC29.48■■■□□ 2.31
Usp40Q8BWR4 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
Usp40Q8BWR4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Usp40Q8BWR4 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
Retrieved 100 of 76,532 protein–RNA pairs in 13.3 ms