Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trim27Q62158 Gm32051-202ENSMUST00000197905 2385 ntBASIC26.43■■□□□ 1.82
Trim27Q62158 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Trim27Q62158 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
Trim27Q62158 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trim27Q62158 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Trim27Q62158 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Spata5l1-202ENSMUST00000152813 1526 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Trim27Q62158 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Trim27Q62158 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Trim27Q62158 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Trim27Q62158 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Trim27Q62158 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC26.39■■□□□ 1.81
Trim27Q62158 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
Trim27Q62158 Dok6-201ENSMUST00000097495 1441 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Trim27Q62158 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Trim27Q62158 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Trim27Q62158 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC26.38■■□□□ 1.81
Trim27Q62158 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim27Q62158 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
Trim27Q62158 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim27Q62158 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC26.37■■□□□ 1.81
Trim27Q62158 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC26.37■■□□□ 1.81
Trim27Q62158 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim27Q62158 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC26.37■■□□□ 1.81
Trim27Q62158 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Trim27Q62158 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim27Q62158 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC26.36■■□□□ 1.81
Trim27Q62158 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trim27Q62158 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC26.36■■□□□ 1.81
Trim27Q62158 Tmem150a-201ENSMUST00000069695 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC26.35■■□□□ 1.81
Trim27Q62158 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC26.35■■□□□ 1.81
Trim27Q62158 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC26.35■■□□□ 1.81
Trim27Q62158 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Serp2-201ENSMUST00000064517 748 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim27Q62158 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim27Q62158 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim27Q62158 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim27Q62158 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim27Q62158 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim27Q62158 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
Trim27Q62158 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim27Q62158 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC26.33■■□□□ 1.81
Trim27Q62158 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Trim27Q62158 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim27Q62158 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim27Q62158 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC26.32■■□□□ 1.8
Trim27Q62158 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC26.31■■□□□ 1.8
Trim27Q62158 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim27Q62158 Gm13042-201ENSMUST00000119244 1955 ntBASIC26.31■■□□□ 1.8
Trim27Q62158 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trim27Q62158 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC26.3■■□□□ 1.8
Trim27Q62158 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC26.3■■□□□ 1.8
Trim27Q62158 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Trim27Q62158 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim27Q62158 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Trim27Q62158 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim27Q62158 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC26.28■■□□□ 1.8
Trim27Q62158 Nsd1-203ENSMUST00000224156 1149 ntBASIC26.28■■□□□ 1.8
Trim27Q62158 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim27Q62158 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC26.27■■□□□ 1.8
Trim27Q62158 Gm13238-201ENSMUST00000117655 780 ntBASIC26.27■■□□□ 1.8
Trim27Q62158 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trim27Q62158 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim27Q62158 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC26.26■■□□□ 1.79
Trim27Q62158 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim27Q62158 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim27Q62158 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC26.26■■□□□ 1.79
Trim27Q62158 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
Trim27Q62158 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim27Q62158 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Trim27Q62158 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim27Q62158 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim27Q62158 Fastk-202ENSMUST00000115041 1399 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
Trim27Q62158 AC158990.1-201ENSMUST00000221450 2016 ntBASIC26.25■■□□□ 1.79
Trim27Q62158 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim27Q62158 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
Trim27Q62158 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Trim27Q62158 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim27Q62158 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim27Q62158 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim27Q62158 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim27Q62158 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC26.23■■□□□ 1.79
Trim27Q62158 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC26.23■■□□□ 1.79
Trim27Q62158 Gm45444-201ENSMUST00000211394 898 ntBASIC26.23■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms