Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC22.4■■□□□ 1.18
Cxcl12P40224 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Cxcl12P40224 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Cxcl12P40224 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC22.39■■□□□ 1.18
Cxcl12P40224 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
Cxcl12P40224 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Cxcl12P40224 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC22.39■■□□□ 1.17
Cxcl12P40224 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
Cxcl12P40224 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC22.39■■□□□ 1.17
Cxcl12P40224 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Cxcl12P40224 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
Cxcl12P40224 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
Cxcl12P40224 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Cxcl12P40224 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
Cxcl12P40224 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
Cxcl12P40224 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cxcl12P40224 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
Cxcl12P40224 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
Cxcl12P40224 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
Cxcl12P40224 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cxcl12P40224 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cxcl12P40224 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
Cxcl12P40224 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
Cxcl12P40224 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
Cxcl12P40224 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
Cxcl12P40224 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC22.35■■□□□ 1.17
Cxcl12P40224 Gm43137-201ENSMUST00000198052 594 ntBASIC22.34■■□□□ 1.17
Cxcl12P40224 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC22.34■■□□□ 1.17
Cxcl12P40224 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cxcl12P40224 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Cxcl12P40224 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Cxcl12P40224 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Cxcl12P40224 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC22.33■■□□□ 1.17
Cxcl12P40224 Mir7075-201ENSMUST00000184187 82 ntBASIC22.33■■□□□ 1.17
Cxcl12P40224 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cxcl12P40224 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Cxcl12P40224 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC22.32■■□□□ 1.16
Cxcl12P40224 Gm43017-201ENSMUST00000198296 752 ntBASIC22.32■■□□□ 1.16
Cxcl12P40224 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Cxcl12P40224 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
Cxcl12P40224 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Cxcl12P40224 Gm5874-201ENSMUST00000096101 508 ntBASIC22.31■■□□□ 1.16
Cxcl12P40224 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC22.3■■□□□ 1.16
Cxcl12P40224 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
Cxcl12P40224 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cxcl12P40224 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
Cxcl12P40224 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cxcl12P40224 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Cxcl12P40224 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC22.29■■□□□ 1.16
Cxcl12P40224 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cxcl12P40224 AC116713.1-201ENSMUST00000215074 430 ntBASIC22.29■■□□□ 1.16
Cxcl12P40224 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cxcl12P40224 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC22.29■■□□□ 1.16
Cxcl12P40224 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cxcl12P40224 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cxcl12P40224 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
Cxcl12P40224 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cxcl12P40224 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Cxcl12P40224 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Cxcl12P40224 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Cxcl12P40224 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Cxcl12P40224 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
Cxcl12P40224 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC22.27■■□□□ 1.16
Cxcl12P40224 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC22.27■■□□□ 1.16
Cxcl12P40224 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
Cxcl12P40224 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cxcl12P40224 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC22.26■■□□□ 1.15
Cxcl12P40224 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Cxcl12P40224 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cxcl12P40224 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
Cxcl12P40224 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
Cxcl12P40224 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC22.26■■□□□ 1.15
Cxcl12P40224 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cxcl12P40224 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cxcl12P40224 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC22.25■■□□□ 1.15
Cxcl12P40224 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Cxcl12P40224 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
Cxcl12P40224 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Cxcl12P40224 Gm9870-201ENSMUST00000063874 645 ntBASIC22.24■■□□□ 1.15
Cxcl12P40224 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
Cxcl12P40224 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC22.24■■□□□ 1.15
Cxcl12P40224 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Cxcl12P40224 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC22.23■■□□□ 1.15
Cxcl12P40224 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC22.23■■□□□ 1.15
Cxcl12P40224 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC22.23■■□□□ 1.15
Cxcl12P40224 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC22.23■■□□□ 1.15
Cxcl12P40224 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC22.23■■□□□ 1.15
Cxcl12P40224 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms