Protein–RNA interactions for Protein: P09022

Hoxa1, Homeobox protein Hox-A1, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa1P09022 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hoxa1P09022 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hoxa1P09022 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hoxa1P09022 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Hoxa1P09022 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
Hoxa1P09022 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Hoxa1P09022 Specc1-206ENSMUST00000201015 1789 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Hoxa1P09022 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Hoxa1P09022 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC17.29■□□□□ 0.36
Hoxa1P09022 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Hoxa1P09022 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Hoxa1P09022 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC17.28■□□□□ 0.36
Hoxa1P09022 AC151971.4-201ENSMUST00000214717 704 ntBASIC17.28■□□□□ 0.36
Hoxa1P09022 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Hoxa1P09022 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Hoxa1P09022 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hoxa1P09022 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hoxa1P09022 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC17.27■□□□□ 0.36
Hoxa1P09022 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC17.27■□□□□ 0.36
Hoxa1P09022 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hoxa1P09022 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC17.27■□□□□ 0.36
Hoxa1P09022 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hoxa1P09022 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Hoxa1P09022 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Hoxa1P09022 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC17.26■□□□□ 0.35
Hoxa1P09022 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC17.26■□□□□ 0.35
Hoxa1P09022 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Hoxa1P09022 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Hoxa1P09022 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
Hoxa1P09022 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Hoxa1P09022 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC17.25■□□□□ 0.35
Hoxa1P09022 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Hoxa1P09022 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
Hoxa1P09022 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Notumos-201ENSMUST00000151998 2659 ntBASIC17.24■□□□□ 0.35
Hoxa1P09022 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC17.24■□□□□ 0.35
Hoxa1P09022 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Hoxa1P09022 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hoxa1P09022 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.23■□□□□ 0.35
Hoxa1P09022 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC17.23■□□□□ 0.35
Hoxa1P09022 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hoxa1P09022 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hoxa1P09022 Ppp1r12c-201ENSMUST00000013886 2983 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Hoxa1P09022 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Hoxa1P09022 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hoxa1P09022 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC17.22■□□□□ 0.35
Hoxa1P09022 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hoxa1P09022 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Hoxa1P09022 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Hoxa1P09022 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Hoxa1P09022 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
Hoxa1P09022 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Hoxa1P09022 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Pink1-203ENSMUST00000105817 1711 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Hoxa1P09022 Gm9934-202ENSMUST00000191246 1713 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Hoxa1P09022 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Hoxa1P09022 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Hoxa1P09022 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Hoxa1P09022 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms