Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm12106-201ENSMUST00000116006 1200 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Litaf-202ENSMUST00000117360 763 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Rdh18-ps-201ENSMUST00000137395 944 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm2639-201ENSMUST00000156881 1297 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Pde4b-210ENSMUST00000172616 823 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm37424-201ENSMUST00000191727 561 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm37319-201ENSMUST00000193500 636 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 AC153962.4-201ENSMUST00000217878 242 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gm18515-201ENSMUST00000219755 797 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 AC122314.1-201ENSMUST00000223056 2239 ntBASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Ndc80-201ENSMUST00000024851 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 0610010F05Rik-208ENSMUST00000180260 4128 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 BC051019-201ENSMUST00000033334 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim47Q8C0E3 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Pbrm1-203ENSMUST00000052239 5065 ntAPPRIS ALT1 TSL 5 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Ube2j2-204ENSMUST00000105582 1394 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Ighv2-9-201ENSMUST00000103451 362 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Fgf18-202ENSMUST00000109363 991 ntTSL 3 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Mir7221-201ENSMUST00000184009 72 ntBASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Gm21868-201ENSMUST00000185623 1230 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Gm20803-202ENSMUST00000190968 1230 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Hck-204ENSMUST00000191431 1575 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Naa10-201ENSMUST00000033763 962 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Gm10268-201ENSMUST00000085340 555 ntBASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Nphp4-202ENSMUST00000081393 5027 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Ccnc-204ENSMUST00000120679 1453 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Gtf2ird1-229ENSMUST00000202554 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim47Q8C0E3 Camk2b-206ENSMUST00000101585 1650 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Zfp82-201ENSMUST00000080834 2181 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Sp2-201ENSMUST00000062652 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Kctd20-202ENSMUST00000117672 2219 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Gucy2e-202ENSMUST00000108664 4415 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Suv39h1-203ENSMUST00000115638 3116 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Snora78-201ENSMUST00000158630 128 ntBASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Gm44136-201ENSMUST00000203819 1106 ntBASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Gm36198-201ENSMUST00000217490 416 ntTSL 3 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Pym1-203ENSMUST00000218218 1143 ntTSL 3 BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Tyms-ps-201ENSMUST00000219550 915 ntBASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Sema3b-205ENSMUST00000102532 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Qsox1-202ENSMUST00000111764 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim47Q8C0E3 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms