Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Gm43703-201ENSMUST00000200523 763 ntBASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Nanos3-201ENSMUST00000070102 730 ntAPPRIS P2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Zc3h18-201ENSMUST00000017622 3810 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 2900097C17Rik-202ENSMUST00000192863 4915 ntBASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Ptchd3Q0EEE2 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Ptp4a2-207ENSMUST00000165853 3382 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Acad12-202ENSMUST00000111776 2269 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Otx2-201ENSMUST00000118578 2144 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Prmt2-201ENSMUST00000020452 2016 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Rplp0-201ENSMUST00000086519 1358 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Ptchd3Q0EEE2 Gm38385-201ENSMUST00000194454 2351 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Btrc-202ENSMUST00000111936 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 A730062M13Rik-201ENSMUST00000192843 1910 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Pck2-205ENSMUST00000226352 2784 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm4204-201ENSMUST00000110798 1231 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm15678-201ENSMUST00000117573 960 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Baiap2l2-205ENSMUST00000170955 1058 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm3436-201ENSMUST00000179930 840 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm27321-201ENSMUST00000185021 205 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm7775-201ENSMUST00000218871 853 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm9063-201ENSMUST00000223299 582 ntBASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Pim2-204ENSMUST00000223553 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Olfr554-201ENSMUST00000098221 954 ntAPPRIS P1 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC12.74□□□□□ -0.37
Ptchd3Q0EEE2 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Fbf1-201ENSMUST00000103031 5252 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Ptchd3Q0EEE2 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 45.8 ms