Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.63□□□□□ -0.23
Sox9Q04887 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC13.63□□□□□ -0.23
Sox9Q04887 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Gm17208-201ENSMUST00000168388 535 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.63□□□□□ -0.23
Sox9Q04887 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Gm44126-201ENSMUST00000204831 514 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 Gm45219-201ENSMUST00000205602 465 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 AC123665.1-201ENSMUST00000228204 438 ntBASIC13.63□□□□□ -0.23
Sox9Q04887 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.63□□□□□ -0.23
Sox9Q04887 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Sox9Q04887 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Kcnq2-217ENSMUST00000149964 8209 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Ash2l-202ENSMUST00000110608 2134 ntTSL 5 BASIC13.63□□□□□ -0.23
Sox9Q04887 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sox9Q04887 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Glipr2-202ENSMUST00000107855 1816 ntTSL 2 BASIC13.62□□□□□ -0.23
Sox9Q04887 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Gm13016-201ENSMUST00000126252 1720 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Synm-204ENSMUST00000208231 4457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Sox9Q04887 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
Sox9Q04887 Gm12539-201ENSMUST00000121549 1098 ntBASIC13.62□□□□□ -0.23
Sox9Q04887 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC13.62□□□□□ -0.23
Sox9Q04887 Gm8194-201ENSMUST00000159783 859 ntBASIC13.62□□□□□ -0.23
Sox9Q04887 Iqcf6-201ENSMUST00000171091 537 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Sox9Q04887 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC13.62□□□□□ -0.23
Sox9Q04887 Gm2445-201ENSMUST00000182798 989 ntBASIC13.62□□□□□ -0.23
Sox9Q04887 AC122305.4-201ENSMUST00000216159 1206 ntBASIC13.62□□□□□ -0.23
Sox9Q04887 Cpped1-203ENSMUST00000121750 2614 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC13.62□□□□□ -0.23
Sox9Q04887 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Troap-201ENSMUST00000039665 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Sox9Q04887 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Gypc-202ENSMUST00000174000 2072 ntAPPRIS ALT2 TSL 3 BASIC13.62□□□□□ -0.23
Sox9Q04887 Slc7a7-202ENSMUST00000195970 2057 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Sox9Q04887 Eif4e2-206ENSMUST00000113233 1807 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Sox9Q04887 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sox9Q04887 Acly-202ENSMUST00000107385 1741 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC13.61□□□□□ -0.23
Sox9Q04887 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC13.61□□□□□ -0.23
Sox9Q04887 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Sox9Q04887 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Vldlr-208ENSMUST00000172302 3855 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Sox9Q04887 Morn1-201ENSMUST00000030915 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Tufm-201ENSMUST00000098048 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Sox9Q04887 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Gm8856-201ENSMUST00000185254 1144 ntBASIC13.61□□□□□ -0.23
Sox9Q04887 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.61□□□□□ -0.23
Sox9Q04887 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Spcs1-203ENSMUST00000226374 592 ntBASIC13.61□□□□□ -0.23
Sox9Q04887 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.61□□□□□ -0.23
Sox9Q04887 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Sox9Q04887 Olfr887-201ENSMUST00000074681 930 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Sox9Q04887 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Fgfr3-203ENSMUST00000114411 4225 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Sox9Q04887 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Acot7-202ENSMUST00000075363 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Sox9Q04887 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Pcgf2-201ENSMUST00000018681 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Sox9Q04887 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Sox9Q04887 Dzip1-201ENSMUST00000004055 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms