Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm43714-201ENSMUST00000198351 1204 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm38671-201ENSMUST00000200573 130 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm7287-201ENSMUST00000205267 602 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Atp6v0c-ps1-201ENSMUST00000206596 463 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Mcrip1-201ENSMUST00000034913 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Gm5356-201ENSMUST00000093326 615 ntBASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Chrnd-202ENSMUST00000186373 2949 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Aqp6-201ENSMUST00000023754 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Mrgprf-201ENSMUST00000033386 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Upf3bQ3ULL6 Ankra2-208ENSMUST00000226100 1476 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gga3-202ENSMUST00000106508 3582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ctbs-202ENSMUST00000061937 2892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 B230217C12Rik-202ENSMUST00000155954 2181 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Selenoh-203ENSMUST00000117299 747 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gm11478-201ENSMUST00000117851 599 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gm5303-201ENSMUST00000117943 1252 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gm6447-201ENSMUST00000118905 835 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 9130410C08Rik-201ENSMUST00000155499 1088 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Fars2-202ENSMUST00000099582 962 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ociad1-201ENSMUST00000031038 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ints3-202ENSMUST00000071488 4038 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Evl-203ENSMUST00000109854 1870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Kifc3-202ENSMUST00000169353 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Fmn2-201ENSMUST00000030039 6442 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Upf3bQ3ULL6 Gm15163-201ENSMUST00000120749 1302 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Dhx57-201ENSMUST00000038166 4918 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Rnf40-202ENSMUST00000205694 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 4930513N10Rik-204ENSMUST00000212647 3957 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Abhd6-203ENSMUST00000225234 1958 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Mir1894-201ENSMUST00000122802 81 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Gm6244-201ENSMUST00000178732 841 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Gm27892-201ENSMUST00000185017 106 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Myl6-205ENSMUST00000217969 608 ntTSL 2 BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 AC134335.2-201ENSMUST00000227660 440 ntBASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Upf3bQ3ULL6 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms