Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC13.82□□□□□ -0.2
Rnf40Q3U319 Gm43222-201ENSMUST00000199013 603 ntBASIC13.82□□□□□ -0.2
Rnf40Q3U319 Gm32296-201ENSMUST00000220590 1057 ntTSL 3 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 CT025525.2-201ENSMUST00000227743 423 ntBASIC13.82□□□□□ -0.2
Rnf40Q3U319 Mzt1-203ENSMUST00000227948 952 ntBASIC13.82□□□□□ -0.2
Rnf40Q3U319 Rgs12-207ENSMUST00000114285 2924 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Cdc37l1-208ENSMUST00000225310 4079 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC13.82□□□□□ -0.2
Rnf40Q3U319 Cend1-203ENSMUST00000137488 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Apbb2-215ENSMUST00000162349 3362 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Apbb2-201ENSMUST00000087256 3362 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Slc6a18-210ENSMUST00000223074 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rnf40Q3U319 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Kif2a-202ENSMUST00000117423 2023 ntTSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Zfp429-202ENSMUST00000181071 2117 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Vmn1r-ps8-201ENSMUST00000177200 838 ntBASIC13.81□□□□□ -0.2
Rnf40Q3U319 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Rian-215ENSMUST00000183180 633 ntTSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 1600019K03Rik-201ENSMUST00000187829 477 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm18027-201ENSMUST00000218947 619 ntBASIC13.81□□□□□ -0.2
Rnf40Q3U319 Thap2-203ENSMUST00000218989 527 ntBASIC13.81□□□□□ -0.2
Rnf40Q3U319 CT025642.1-201ENSMUST00000224734 1219 ntBASIC13.81□□□□□ -0.2
Rnf40Q3U319 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Gm18856-201ENSMUST00000178096 1374 ntBASIC13.81□□□□□ -0.2
Rnf40Q3U319 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rnf40Q3U319 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 AA543401-201ENSMUST00000164248 1269 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Gm37073-201ENSMUST00000192469 1222 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Gm42670-201ENSMUST00000201816 1292 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Gm45072-201ENSMUST00000208673 929 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 AC173345.3-201ENSMUST00000221245 1093 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 AC132467.2-202ENSMUST00000227726 559 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 AC124751.1-201ENSMUST00000222716 1408 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Gm42706-201ENSMUST00000199733 1910 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.8□□□□□ -0.2
Rnf40Q3U319 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rnf40Q3U319 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms