Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Gm12241-201ENSMUST00000118330 726 ntBASIC11.44□□□□□ -0.58
Nkx3-1P97436 4930579D09Rik-201ENSMUST00000132321 469 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Gm6334-201ENSMUST00000207083 228 ntBASIC11.44□□□□□ -0.58
Nkx3-1P97436 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Cyp11a1-201ENSMUST00000034874 2120 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 4931406C07Rik-208ENSMUST00000216955 1750 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Nkx3-1P97436 Nr2f2-201ENSMUST00000032768 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Prx-203ENSMUST00000108355 5433 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Cyth2-208ENSMUST00000211783 1983 ntTSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 AC153366.2-201ENSMUST00000219461 1984 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Pcdh7-202ENSMUST00000094783 3752 ntAPPRIS ALT1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Paox-201ENSMUST00000026537 4655 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Plcb2-202ENSMUST00000102524 5145 ntAPPRIS P3 TSL 2 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Camk2d-206ENSMUST00000106402 4180 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 B3gat1-204ENSMUST00000160899 3801 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm6222-202ENSMUST00000182143 629 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm29396-201ENSMUST00000185659 716 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm38241-201ENSMUST00000192641 898 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm4959-201ENSMUST00000197271 1044 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gm43758-201ENSMUST00000199500 367 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Cts7-204ENSMUST00000225321 1257 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Pfdn1-201ENSMUST00000025204 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Kifc5c-ps-201ENSMUST00000179040 1530 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Ccdc185-201ENSMUST00000060041 2055 ntAPPRIS P1 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Unc5d-204ENSMUST00000210785 3404 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Me2-201ENSMUST00000025439 2455 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Klhl32-204ENSMUST00000108218 7143 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Fam71f1-203ENSMUST00000164560 1411 ntAPPRIS P4 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 AC096628.2-201ENSMUST00000225443 1413 ntBASIC11.43□□□□□ -0.58
Nkx3-1P97436 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
Nkx3-1P97436 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Slc39a8-202ENSMUST00000081978 3314 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm14608-201ENSMUST00000120030 1553 ntBASIC11.42□□□□□ -0.58
Nkx3-1P97436 Gm6203-201ENSMUST00000209575 1342 ntBASIC11.42□□□□□ -0.58
Nkx3-1P97436 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Mogat2-201ENSMUST00000064231 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Cngb1-201ENSMUST00000093268 1512 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Nkx3-1P97436 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC11.42□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms