Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC11.78□□□□□ -0.52
Col5a1O88207 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Lypla1-201ENSMUST00000027036 2507 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.78□□□□□ -0.52
Col5a1O88207 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 Gm16481-201ENSMUST00000119074 1227 ntBASIC11.78□□□□□ -0.52
Col5a1O88207 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 Gm28411-201ENSMUST00000189864 341 ntTSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 Gm44136-201ENSMUST00000203819 1106 ntBASIC11.78□□□□□ -0.52
Col5a1O88207 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.78□□□□□ -0.52
Col5a1O88207 AC136986.1-201ENSMUST00000222829 380 ntTSL 2 BASIC11.78□□□□□ -0.52
Col5a1O88207 Cpq-207ENSMUST00000228916 1842 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Col5a1O88207 Olfr649-202ENSMUST00000106859 1382 ntAPPRIS P1 TSL 3 BASIC11.78□□□□□ -0.52
Col5a1O88207 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Col5a1O88207 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Col5a1O88207 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC11.77□□□□□ -0.52
Col5a1O88207 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
Col5a1O88207 Gm8856-201ENSMUST00000185254 1144 ntBASIC11.77□□□□□ -0.52
Col5a1O88207 Gm3096-201ENSMUST00000185770 364 ntBASIC11.77□□□□□ -0.52
Col5a1O88207 4931419H13Rik-201ENSMUST00000199770 973 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC11.77□□□□□ -0.52
Col5a1O88207 Gm10752-201ENSMUST00000218348 729 ntBASIC11.77□□□□□ -0.52
Col5a1O88207 AC154276.3-201ENSMUST00000227643 998 ntBASIC11.77□□□□□ -0.52
Col5a1O88207 Ccdc70-202ENSMUST00000070649 961 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Bcl2l1-202ENSMUST00000109820 2568 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Col5a1O88207 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Col5a1O88207 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Col5a1O88207 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Col5a1O88207 Shroom3-211ENSMUST00000225438 5742 ntBASIC11.77□□□□□ -0.53
Col5a1O88207 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Col5a1O88207 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Erlin1-206ENSMUST00000170801 3172 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Col5a1O88207 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm16308-201ENSMUST00000162171 940 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm28760-202ENSMUST00000190376 481 ntTSL 5 BASIC11.76□□□□□ -0.53
Col5a1O88207 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.76□□□□□ -0.53
Col5a1O88207 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Col5a1O88207 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Myt1l-204ENSMUST00000218198 2735 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Abhd14b-209ENSMUST00000216130 1624 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Col5a1O88207 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Nek7-201ENSMUST00000027642 3737 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Ctsa-203ENSMUST00000103093 2534 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Rpl15-204ENSMUST00000112598 802 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm14597-202ENSMUST00000129769 715 ntAPPRIS P5 TSL 3 BASIC11.76□□□□□ -0.53
Col5a1O88207 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC11.76□□□□□ -0.53
Col5a1O88207 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm5597-201ENSMUST00000182353 1193 ntBASIC11.76□□□□□ -0.53
Col5a1O88207 Gm37201-201ENSMUST00000191845 523 ntBASIC11.76□□□□□ -0.53
Col5a1O88207 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC11.76□□□□□ -0.53
Col5a1O88207 Gm44405-201ENSMUST00000198952 126 ntBASIC11.76□□□□□ -0.53
Col5a1O88207 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC11.76□□□□□ -0.53
Col5a1O88207 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 AC125486.1-201ENSMUST00000218701 320 ntBASIC11.76□□□□□ -0.53
Col5a1O88207 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Col5a1O88207 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms