Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Klk6-203ENSMUST00000107968 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ldb3Q9JKS4 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
Ldb3Q9JKS4 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Maged2-201ENSMUST00000026302 2207 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 A930007I19Rik-203ENSMUST00000181726 2099 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Acy1-201ENSMUST00000024031 1529 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 2310040G24Rik-202ENSMUST00000189386 775 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Gm38671-201ENSMUST00000200573 130 ntBASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 AC173210.1-201ENSMUST00000222341 1131 ntBASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Csrp3-201ENSMUST00000032658 877 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Gm13199-201ENSMUST00000071016 747 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Tcf4-226ENSMUST00000201094 2172 ntTSL 5 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
Ldb3Q9JKS4 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Gm15544-201ENSMUST00000118776 1531 ntBASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 AC238940.1-201ENSMUST00000225106 1858 ntBASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Ldb3Q9JKS4 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Slco3a1-202ENSMUST00000098371 2709 ntAPPRIS ALT1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm15806-201ENSMUST00000120696 955 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm6244-201ENSMUST00000178732 841 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm44064-201ENSMUST00000204964 1087 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm18041-201ENSMUST00000218210 618 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 AC110817.1-201ENSMUST00000225706 605 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm5356-201ENSMUST00000093326 615 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gm43423-201ENSMUST00000198390 2094 ntBASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Fggy-202ENSMUST00000079223 1891 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Ldb3Q9JKS4 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Sned1-201ENSMUST00000062202 9147 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Slc19a2-202ENSMUST00000159230 3432 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Retsat-205ENSMUST00000176364 1647 ntTSL 5 BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Lingo1-202ENSMUST00000114247 2287 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Gm9002-201ENSMUST00000178437 499 ntBASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Gm20546-201ENSMUST00000173141 1889 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Tcf4-204ENSMUST00000114978 2437 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Cd33-201ENSMUST00000004728 1962 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Gm37019-201ENSMUST00000192133 2134 ntBASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Ldb3Q9JKS4 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ldb3Q9JKS4 Zc3hc1-210ENSMUST00000152391 1673 ntTSL 5 BASIC12□□□□□ -0.49
Ldb3Q9JKS4 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms