Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 AC137842.1-201ENSMUST00000227896 2064 ntBASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Cacna1g-208ENSMUST00000107790 8035 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gbgt1-203ENSMUST00000163121 1335 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Rbbp5-207ENSMUST00000190997 2856 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Ptchd3Q0EEE2 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm13223-201ENSMUST00000118609 747 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 3000002C10Rik-202ENSMUST00000133495 1008 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Mir6956-201ENSMUST00000183598 62 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Dap-204ENSMUST00000186425 597 ntTSL 3 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gstp2-201ENSMUST00000042700 770 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Tmed9-203ENSMUST00000224741 1450 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Clpx-202ENSMUST00000113824 2809 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Uqcrq-201ENSMUST00000061326 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Clcnka-202ENSMUST00000105790 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Trp53i11-202ENSMUST00000111266 2703 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ptchd3Q0EEE2 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Sgip1-201ENSMUST00000066824 4305 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm42863-201ENSMUST00000197875 2958 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Ppil2-212ENSMUST00000164458 2230 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm28323-201ENSMUST00000186817 2499 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Cldn14-201ENSMUST00000050962 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Ppp1r18-205ENSMUST00000187690 3185 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm15460-201ENSMUST00000118147 391 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 9430007M09Rik-201ENSMUST00000201947 804 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Gm9229-201ENSMUST00000222777 126 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 AC156016.3-201ENSMUST00000228623 344 ntBASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Lcn5-201ENSMUST00000028306 696 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ptchd3Q0EEE2 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 65.4 ms