Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Gm26635-201ENSMUST00000181077 3199 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC10.75□□□□□ -0.69
Cdx1P18111 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC10.75□□□□□ -0.69
Cdx1P18111 Gm15747-202ENSMUST00000151096 524 ntTSL 3 BASIC10.75□□□□□ -0.69
Cdx1P18111 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC10.75□□□□□ -0.69
Cdx1P18111 Khdc3-202ENSMUST00000167514 1251 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC10.75□□□□□ -0.69
Cdx1P18111 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC10.75□□□□□ -0.69
Cdx1P18111 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Rps27l-201ENSMUST00000040917 499 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Ak4-202ENSMUST00000106945 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Jph2-201ENSMUST00000017961 4211 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Cdx1P18111 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Nxf1-201ENSMUST00000010241 2326 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Ak4-201ENSMUST00000102780 4186 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Gm26703-201ENSMUST00000181370 2864 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Cdx1P18111 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Cdx1P18111 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Muc20-201ENSMUST00000041123 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Cdx1P18111 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Nupl1-206ENSMUST00000225111 2936 ntBASIC10.74□□□□□ -0.69
Cdx1P18111 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Cdx1P18111 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Krtap1-3-201ENSMUST00000104930 879 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm42934-201ENSMUST00000196920 1345 ntBASIC10.74□□□□□ -0.69
Cdx1P18111 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Cdx1P18111 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Cdx1P18111 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Tmem132e-202ENSMUST00000092852 4105 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
Cdx1P18111 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Ntf3-201ENSMUST00000050484 1483 ntAPPRIS P3 TSL 2 BASIC10.74□□□□□ -0.69
Cdx1P18111 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Cdx1P18111 Nfe2l1-210ENSMUST00000167110 3547 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
Cdx1P18111 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Matr3-206ENSMUST00000187389 3107 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Thy1-201ENSMUST00000114840 1735 ntAPPRIS P1 TSL 2 BASIC10.73□□□□□ -0.69
Cdx1P18111 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
Cdx1P18111 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Cdx1P18111 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
Cdx1P18111 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC10.73□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 36.6 ms