Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Shroom1-201ENSMUST00000018531 2630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Prkcd-203ENSMUST00000112203 1927 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Cct3-ps1-201ENSMUST00000118023 1647 ntBASIC13.97□□□□□ -0.17
Clp1Q99LI9 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Clp1Q99LI9 Gm26770-201ENSMUST00000180586 2237 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm26513-201ENSMUST00000181802 2489 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Rpl13-ps1-201ENSMUST00000121801 668 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 Crls1-204ENSMUST00000124836 1267 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Tmem267-202ENSMUST00000176171 880 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
Clp1Q99LI9 AA914427-201ENSMUST00000193194 1166 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm44967-201ENSMUST00000207047 631 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm5950-201ENSMUST00000213337 772 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Gm25007-201ENSMUST00000083808 133 ntBASIC13.96□□□□□ -0.17
Clp1Q99LI9 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Camk2d-203ENSMUST00000106399 4169 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Pomgnt1-201ENSMUST00000106494 2226 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Clp1Q99LI9 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
Clp1Q99LI9 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
Clp1Q99LI9 Slc41a3-201ENSMUST00000032177 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
Clp1Q99LI9 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
Clp1Q99LI9 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.96□□□□□ -0.18
Clp1Q99LI9 Cmpk1-201ENSMUST00000030491 3170 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Rad17-202ENSMUST00000177848 2392 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm25214-201ENSMUST00000104573 129 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm14028-201ENSMUST00000117434 479 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm11772-201ENSMUST00000136542 532 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm13570-201ENSMUST00000140763 309 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm22902-201ENSMUST00000158488 302 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Dleu2-205ENSMUST00000182325 463 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Dleu2-212ENSMUST00000183079 535 ntTSL 3 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Mir6979-201ENSMUST00000183927 56 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Gm44772-201ENSMUST00000207623 1191 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Abhd11os-203ENSMUST00000222613 363 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.95□□□□□ -0.18
Clp1Q99LI9 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Kcnq2-207ENSMUST00000103050 2713 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
Clp1Q99LI9 Apol6-206ENSMUST00000149569 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms