Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC15.37■□□□□ 0.05
Col1a1P11087 Anks1b-202ENSMUST00000099366 2549 ntTSL 5 BASIC15.37■□□□□ 0.05
Col1a1P11087 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Zap70-201ENSMUST00000027291 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Col1a1P11087 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Mapk8-204ENSMUST00000111944 1528 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col1a1P11087 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12616-201ENSMUST00000118594 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Hmgn1-202ENSMUST00000133885 261 ntTSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Mir1943-201ENSMUST00000158276 73 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC15.36■□□□□ 0.05
Col1a1P11087 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12624-201ENSMUST00000177615 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12621-201ENSMUST00000177760 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12615-201ENSMUST00000177970 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12622-201ENSMUST00000177975 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12627-201ENSMUST00000178412 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12625-201ENSMUST00000179122 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12614-201ENSMUST00000179586 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm12613-201ENSMUST00000180323 382 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Col1a1P11087 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm43050-201ENSMUST00000201062 338 ntTSL 2 BASIC15.36■□□□□ 0.05
Col1a1P11087 Gm45691-201ENSMUST00000206905 1120 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm44651-201ENSMUST00000207343 372 ntBASIC15.36■□□□□ 0.05
Col1a1P11087 Gm31224-201ENSMUST00000212682 513 ntTSL 3 BASIC15.36■□□□□ 0.05
Col1a1P11087 Tnnt3-201ENSMUST00000074187 1007 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Matn3-201ENSMUST00000020899 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Brd7-201ENSMUST00000034085 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC15.36■□□□□ 0.05
Col1a1P11087 Pfkfb3-203ENSMUST00000100411 2008 ntTSL 5 BASIC15.36■□□□□ 0.05
Col1a1P11087 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Slc43a1-203ENSMUST00000111625 2487 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Cabp7-201ENSMUST00000009219 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
Col1a1P11087 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Col1a1P11087 Gm5884-201ENSMUST00000036712 1479 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Crry-ps-201ENSMUST00000079090 1309 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Arhgef1-203ENSMUST00000117419 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Col1a1P11087 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Col1a1P11087 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm16481-201ENSMUST00000119074 1227 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Col1a1P11087 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm10109-202ENSMUST00000206890 1211 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Gm45224-201ENSMUST00000208203 414 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm45925-201ENSMUST00000218882 744 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 AC113031.8-201ENSMUST00000227856 631 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Col1a1P11087 Krtap5-1-201ENSMUST00000084413 588 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC15.35■□□□□ 0.05
Col1a1P11087 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Triml2-203ENSMUST00000209872 1395 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
Col1a1P11087 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Cadps2-206ENSMUST00000115361 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Pgm5-201ENSMUST00000047666 3239 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Gm4864-201ENSMUST00000219894 1461 ntBASIC15.35■□□□□ 0.05
Col1a1P11087 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Cchcr1-202ENSMUST00000164242 2656 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Col1a1P11087 CU062626.3-201ENSMUST00000225522 1411 ntBASIC15.34■□□□□ 0.05
Col1a1P11087 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms