Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC11.83□□□□□ -0.52
Col5a1O88207 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 2410015M20Rik-201ENSMUST00000052832 755 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Col5a1O88207 Gm6994-201ENSMUST00000088880 1163 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC11.83□□□□□ -0.52
Col5a1O88207 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC11.83□□□□□ -0.52
Col5a1O88207 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Igsf8-204ENSMUST00000139528 2866 ntTSL 2 BASIC11.83□□□□□ -0.52
Col5a1O88207 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Col5a1O88207 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col5a1O88207 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Col5a1O88207 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Col5a1O88207 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Armcx1-206ENSMUST00000113201 2228 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Col5a1O88207 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Gm4297-201ENSMUST00000119285 2579 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.82□□□□□ -0.52
Col5a1O88207 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Scp2-201ENSMUST00000030340 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Etfrf1-203ENSMUST00000111721 1336 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Gm3287-205ENSMUST00000228893 1332 ntBASIC11.82□□□□□ -0.52
Col5a1O88207 Crry-ps-201ENSMUST00000079090 1309 ntBASIC11.82□□□□□ -0.52
Col5a1O88207 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Bag6-203ENSMUST00000172571 3599 ntTSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col5a1O88207 Clec18a-203ENSMUST00000188466 1973 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Clec18a-201ENSMUST00000039597 1998 ntAPPRIS P5 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Thnsl2-201ENSMUST00000074241 1821 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Ccdc163-201ENSMUST00000030452 1524 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Myadm-203ENSMUST00000203328 1899 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Col5a1O88207 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Col5a1O88207 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Adcyap1r1-206ENSMUST00000167234 1575 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Il6ra-201ENSMUST00000029559 3343 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Col5a1O88207 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm23699-201ENSMUST00000158835 135 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm8738-201ENSMUST00000172606 329 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.81□□□□□ -0.52
Col5a1O88207 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm26956-201ENSMUST00000182176 986 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Gm9061-201ENSMUST00000182707 1006 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Col5a1O88207 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Arhgap20os-204ENSMUST00000152203 2113 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Col5a1O88207 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Scaf4-201ENSMUST00000039280 4165 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Btrc-201ENSMUST00000065601 2978 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Gm8885-201ENSMUST00000189382 598 ntBASIC11.81□□□□□ -0.52
Col5a1O88207 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC11.81□□□□□ -0.52
Col5a1O88207 Iws1-206ENSMUST00000212675 2936 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col5a1O88207 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Misp-201ENSMUST00000046833 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col5a1O88207 Zbtb2-202ENSMUST00000100078 3226 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col5a1O88207 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col5a1O88207 Tnk1-203ENSMUST00000108628 2450 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col5a1O88207 Gan-201ENSMUST00000064488 2652 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms