Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm20479-201ENSMUST00000126587 556 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Gstt4-202ENSMUST00000160211 964 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Taldo1-201ENSMUST00000026576 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Gm5161-201ENSMUST00000075243 853 ntBASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Dusp6-201ENSMUST00000020118 2796 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Spata21-201ENSMUST00000051907 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Kdm4b-201ENSMUST00000025036 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Pkp3-202ENSMUST00000106039 2919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Zfp583-201ENSMUST00000062765 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Cxcl16-201ENSMUST00000019064 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Zic4-209ENSMUST00000173933 1764 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
Prpf40aQ9R1C7 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Col25a1-201ENSMUST00000080335 2624 ntAPPRIS P4 TSL 5 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Gm38116-201ENSMUST00000193873 1533 ntBASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Map4k2-201ENSMUST00000025897 4644 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Sqle-201ENSMUST00000022977 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Pax5-213ENSMUST00000173821 996 ntTSL 5 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Gm45242-201ENSMUST00000210666 2129 ntBASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Gm18624-201ENSMUST00000220966 658 ntBASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Gm17330-201ENSMUST00000221047 165 ntBASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Eapp-201ENSMUST00000067272 590 ntTSL 3 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 AC154527.2-201ENSMUST00000225256 1466 ntBASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Luc7l3-202ENSMUST00000107820 3478 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Kctd18-202ENSMUST00000114410 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Arhgap27os3-201ENSMUST00000124462 2729 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Sgce-204ENSMUST00000115577 1776 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Ankrd42-202ENSMUST00000118157 2782 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Prpf40aQ9R1C7 1700029H14Rik-205ENSMUST00000187391 1408 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Pcdhb18-201ENSMUST00000055949 5041 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Tspan32-205ENSMUST00000105924 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm12341-201ENSMUST00000119724 503 ntBASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm13546-201ENSMUST00000135735 401 ntTSL 5 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm36991-201ENSMUST00000191800 648 ntBASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm7558-201ENSMUST00000193221 1165 ntBASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 AI463170-203ENSMUST00000219353 430 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Gm10188-201ENSMUST00000086544 720 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Olfr142-201ENSMUST00000099752 918 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Strip1-201ENSMUST00000064759 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Hspb8-201ENSMUST00000036991 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Sfswap-201ENSMUST00000053737 3313 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
Prpf40aQ9R1C7 Slc25a22-202ENSMUST00000106006 2277 ntTSL 5 BASIC14.66□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 46.8 ms