Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Scarb2-201ENSMUST00000031377 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm13392-201ENSMUST00000117708 150 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm13226-201ENSMUST00000117838 404 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm13886-201ENSMUST00000117876 1183 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm12403-201ENSMUST00000121384 959 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm8062-201ENSMUST00000139696 444 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm4335-201ENSMUST00000182581 1004 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 AC155258.1-201ENSMUST00000219303 253 ntBASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Rpsa-201ENSMUST00000035105 1938 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Ube3b-201ENSMUST00000074002 5194 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Haus7-201ENSMUST00000033737 1380 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Hdac7-202ENSMUST00000088402 4223 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Ushbp1Q8R370 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Smarcb1-201ENSMUST00000000925 1660 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 G6pc3-201ENSMUST00000070334 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Mir17hg-201ENSMUST00000134140 3536 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Cd63-202ENSMUST00000105229 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Trav4d-2-201ENSMUST00000120914 335 ntBASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Prss54-202ENSMUST00000180075 1152 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Cd63-204ENSMUST00000219317 1109 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Ddx27-205ENSMUST00000150571 2151 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pnoc-201ENSMUST00000059339 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pold3-201ENSMUST00000032969 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Ushbp1Q8R370 Pde7b-202ENSMUST00000164195 1665 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Metap1d-201ENSMUST00000037210 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Tle3-204ENSMUST00000159386 4527 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm43273-201ENSMUST00000199649 2594 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm44891-201ENSMUST00000208817 2223 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Hlcs-202ENSMUST00000163193 5371 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Sgce-207ENSMUST00000126151 1522 ntTSL 5 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Ctsk-201ENSMUST00000015664 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Blzf1-203ENSMUST00000120447 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm42928-201ENSMUST00000197338 3339 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Hcrtr1-203ENSMUST00000120154 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm27486-201ENSMUST00000184923 80 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Gm42693-201ENSMUST00000196779 631 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 AC140451.2-201ENSMUST00000228030 664 ntBASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Fam173b-201ENSMUST00000042702 1164 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Dcaf11-204ENSMUST00000121622 2379 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Ushbp1Q8R370 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 85.6 ms