Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC14.7□□□□□ -0.06
Col6a1Q04857 Gm37489-201ENSMUST00000191883 159 ntBASIC14.7□□□□□ -0.06
Col6a1Q04857 Saa2-203ENSMUST00000210769 652 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 CT573086.1-201ENSMUST00000227202 1074 ntBASIC14.7□□□□□ -0.06
Col6a1Q04857 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Saa2-201ENSMUST00000075982 606 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Rn7sk-201ENSMUST00000083103 331 ntBASIC14.7□□□□□ -0.06
Col6a1Q04857 Gm26315-201ENSMUST00000083890 321 ntBASIC14.7□□□□□ -0.06
Col6a1Q04857 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.7□□□□□ -0.06
Col6a1Q04857 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Plaur-201ENSMUST00000002284 1506 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Dlk2-201ENSMUST00000061722 1532 ntTSL 5 BASIC14.7□□□□□ -0.06
Col6a1Q04857 Il11-201ENSMUST00000094892 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Bscl2-206ENSMUST00000160556 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Opn4-201ENSMUST00000022331 2156 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col6a1Q04857 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Gm9333-201ENSMUST00000205452 1323 ntBASIC14.69□□□□□ -0.06
Col6a1Q04857 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Jakmip1-201ENSMUST00000043794 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Car3-201ENSMUST00000029076 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Erg-206ENSMUST00000122199 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Gm3756-201ENSMUST00000169182 1355 ntBASIC14.69□□□□□ -0.06
Col6a1Q04857 Add3-202ENSMUST00000050096 4488 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC14.69□□□□□ -0.06
Col6a1Q04857 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col6a1Q04857 Cybrd1-201ENSMUST00000028403 5339 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gcat-201ENSMUST00000006544 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm2606-201ENSMUST00000100754 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm12537-201ENSMUST00000119266 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm12070-201ENSMUST00000119551 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm12671-201ENSMUST00000119978 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm13292-201ENSMUST00000120014 1000 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm10359-201ENSMUST00000180167 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm12033-201ENSMUST00000180654 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm5559-201ENSMUST00000180755 1002 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Mir6979-201ENSMUST00000183927 56 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 AC122371.3-201ENSMUST00000223402 1061 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Lrmda-201ENSMUST00000075639 908 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Pin1rt1-201ENSMUST00000099659 1172 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Zfp57-211ENSMUST00000174524 1747 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm45684-201ENSMUST00000210244 1571 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Gm6015-201ENSMUST00000217493 1586 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.68□□□□□ -0.06
Col6a1Q04857 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Syngap1-202ENSMUST00000177932 3927 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
Col6a1Q04857 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 BC051537-201ENSMUST00000183290 1668 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Col6a1Q04857 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
Col6a1Q04857 Ube3a-201ENSMUST00000107537 4911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Gm15544-201ENSMUST00000118776 1531 ntBASIC14.67□□□□□ -0.06
Col6a1Q04857 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC14.67□□□□□ -0.06
Col6a1Q04857 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
Col6a1Q04857 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 47.2 ms