Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Slc6a4-202ENSMUST00000108402 2796 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
Syne4Q8CII8 Sipa1-202ENSMUST00000080824 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC15.03■□□□□ -0
Syne4Q8CII8 Rps13-201ENSMUST00000170953 589 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC15.03■□□□□ -0
Syne4Q8CII8 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC15.03■□□□□ -0
Syne4Q8CII8 Gm38317-201ENSMUST00000195564 343 ntBASIC15.03■□□□□ -0
Syne4Q8CII8 Gm19208-201ENSMUST00000213861 912 ntBASIC15.03■□□□□ -0
Syne4Q8CII8 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC15.03■□□□□ -0
Syne4Q8CII8 AC126253.1-202ENSMUST00000226732 835 ntBASIC15.03■□□□□ -0
Syne4Q8CII8 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Syne4Q8CII8 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Nek6-203ENSMUST00000112902 3147 ntTSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Spg20-201ENSMUST00000044116 3770 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Syne4Q8CII8 Ate1-202ENSMUST00000035458 4685 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Rbmx-203ENSMUST00000114730 2019 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Hcrtr1-202ENSMUST00000119423 2439 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
Syne4Q8CII8 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Gm14028-201ENSMUST00000117434 479 ntBASIC15.02■□□□□ -0
Syne4Q8CII8 Gm15276-201ENSMUST00000145953 498 ntBASIC15.02■□□□□ -0
Syne4Q8CII8 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC15.02■□□□□ -0
Syne4Q8CII8 Gm37986-201ENSMUST00000193285 383 ntBASIC15.02■□□□□ -0
Syne4Q8CII8 Gstp-ps-201ENSMUST00000195526 631 ntBASIC15.02■□□□□ -0
Syne4Q8CII8 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC15.02■□□□□ -0
Syne4Q8CII8 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC15.02■□□□□ -0
Syne4Q8CII8 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Ebf4-201ENSMUST00000110286 2670 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.02□□□□□ -0.01
Syne4Q8CII8 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Syne4Q8CII8 Gm19221-201ENSMUST00000221827 1477 ntBASIC15.01□□□□□ -0.01
Syne4Q8CII8 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Ppp6r1-201ENSMUST00000064099 3862 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Mpp4-210ENSMUST00000191200 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Rad54l2-201ENSMUST00000046502 9305 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Ncdn-202ENSMUST00000106116 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Mymx-201ENSMUST00000113529 442 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm11531-201ENSMUST00000117614 555 ntBASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm14130-201ENSMUST00000118417 987 ntBASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm11978-201ENSMUST00000122315 466 ntBASIC15.01□□□□□ -0.01
Syne4Q8CII8 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 1700125G22Rik-201ENSMUST00000181124 861 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 AC135669.1-202ENSMUST00000216742 540 ntBASIC15.01□□□□□ -0.01
Syne4Q8CII8 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Top1mt-201ENSMUST00000000958 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Ctgf-203ENSMUST00000176228 2490 ntTSL 2 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Syne4Q8CII8 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Syne4Q8CII8 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
Syne4Q8CII8 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Syne4Q8CII8 Gm38157-201ENSMUST00000194178 1698 ntBASIC15□□□□□ -0.01
Syne4Q8CII8 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Syne4Q8CII8 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC15□□□□□ -0.01
Syne4Q8CII8 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Syne4Q8CII8 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms