Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
ClpbQ60649 Slc16a3-208ENSMUST00000168579 4335 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
ClpbQ60649 Exd2-201ENSMUST00000038185 3310 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
ClpbQ60649 Map2k7-203ENSMUST00000110994 1600 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
ClpbQ60649 Ap2a1-201ENSMUST00000085399 3442 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
ClpbQ60649 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
ClpbQ60649 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
ClpbQ60649 Lcmt1-201ENSMUST00000033025 1369 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Map10-201ENSMUST00000053078 3542 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
ClpbQ60649 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Syt6-203ENSMUST00000118117 1856 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Aatk-201ENSMUST00000064307 5336 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Mpv17-201ENSMUST00000154241 1724 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Spo11-202ENSMUST00000109125 1591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.83□□□□□ -0.36
ClpbQ60649 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Mknk1-201ENSMUST00000019677 2543 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Ccnc-203ENSMUST00000108240 1406 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Gm13859-201ENSMUST00000119936 1423 ntBASIC12.83□□□□□ -0.36
ClpbQ60649 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Trpc7-206ENSMUST00000173513 2241 ntTSL 5 BASIC12.83□□□□□ -0.36
ClpbQ60649 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
ClpbQ60649 Gm11524-201ENSMUST00000119349 807 ntBASIC12.83□□□□□ -0.36
ClpbQ60649 Zfp414-204ENSMUST00000166627 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC12.83□□□□□ -0.36
ClpbQ60649 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC12.83□□□□□ -0.36
ClpbQ60649 4930432H08Rik-201ENSMUST00000198220 1284 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Blvra-201ENSMUST00000002064 1160 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Gm11149-204ENSMUST00000216483 1275 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 AI463170-204ENSMUST00000220157 447 ntTSL 3 BASIC12.83□□□□□ -0.36
ClpbQ60649 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Zfp414-201ENSMUST00000073570 1197 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.83□□□□□ -0.36
ClpbQ60649 Usp16-202ENSMUST00000119504 2562 ntTSL 5 BASIC12.83□□□□□ -0.36
ClpbQ60649 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Dao-203ENSMUST00000161610 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.36
ClpbQ60649 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Dtnb-223ENSMUST00000174547 2112 ntTSL 5 BASIC12.83□□□□□ -0.36
ClpbQ60649 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 4930556M19Rik-201ENSMUST00000180604 2468 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Gm8775-201ENSMUST00000170943 1327 ntBASIC12.83□□□□□ -0.36
ClpbQ60649 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Notch1-201ENSMUST00000028288 9488 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Arhgef2-208ENSMUST00000175911 2030 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
ClpbQ60649 Oprm1-215ENSMUST00000105607 2369 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ClpbQ60649 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Adm-201ENSMUST00000033054 1390 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Tmtc3-202ENSMUST00000099318 2794 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Gabrg3-202ENSMUST00000068911 9767 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Nfyc-201ENSMUST00000043429 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Cln3-203ENSMUST00000098036 1571 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Pds5b-201ENSMUST00000016569 7417 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Gm45242-201ENSMUST00000210666 2129 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Nfat5-201ENSMUST00000075922 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Sox17-206ENSMUST00000192650 3242 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Rnase10-201ENSMUST00000022424 1629 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC12.82□□□□□ -0.36
ClpbQ60649 Spcs2-ps-201ENSMUST00000122326 682 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Cox16-206ENSMUST00000168463 431 ntTSL 2 BASIC12.82□□□□□ -0.36
ClpbQ60649 Mir7654-201ENSMUST00000185082 70 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Gm43094-201ENSMUST00000196549 921 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Gm19078-201ENSMUST00000206311 727 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Tdrp-206ENSMUST00000210414 323 ntTSL 3 BASIC12.82□□□□□ -0.36
ClpbQ60649 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC12.82□□□□□ -0.36
ClpbQ60649 AC156560.2-201ENSMUST00000221232 264 ntBASIC12.82□□□□□ -0.36
ClpbQ60649 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
ClpbQ60649 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Casp7-201ENSMUST00000026062 2350 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Atrip-201ENSMUST00000045011 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Iffo2-202ENSMUST00000123827 2036 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Fnbp4-201ENSMUST00000013759 4691 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
ClpbQ60649 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ClpbQ60649 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
ClpbQ60649 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
ClpbQ60649 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
ClpbQ60649 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
ClpbQ60649 Ahdc1-204ENSMUST00000105916 6602 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms