Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Pde9a-203ENSMUST00000127929 1891 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Gm12015-201ENSMUST00000117065 843 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Gm44126-201ENSMUST00000204831 514 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Gm7207-201ENSMUST00000211575 1067 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 AC141438.2-201ENSMUST00000215068 271 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 AC135114.1-201ENSMUST00000228682 270 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Pelp1-201ENSMUST00000019065 3435 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Gm43081-201ENSMUST00000199082 1380 ntBASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Lag3-201ENSMUST00000032217 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Hfm1D3Z4R1 Zyx-201ENSMUST00000070635 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Gm28182-201ENSMUST00000188354 2477 ntBASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Dctn6-202ENSMUST00000117243 962 ntTSL 3 BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Ank3-234ENSMUST00000182993 1233 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Gm8285-201ENSMUST00000208293 759 ntBASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Stpg2-202ENSMUST00000106239 2055 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Tspan5-202ENSMUST00000119993 2107 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Tspan13-201ENSMUST00000020896 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hfm1D3Z4R1 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm1667-201ENSMUST00000151651 558 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Rps28-202ENSMUST00000166693 271 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm27438-201ENSMUST00000183480 110 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm32999-201ENSMUST00000192693 562 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm17812-201ENSMUST00000204935 318 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm26953-204ENSMUST00000212526 553 ntTSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 AC107638.1-201ENSMUST00000213690 1061 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 AC108416.1-202ENSMUST00000228927 1201 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Ufc1-201ENSMUST00000080001 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Nob1-201ENSMUST00000003946 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Olfr533-203ENSMUST00000215308 2345 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Sparc-209ENSMUST00000216313 1304 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Sybu-209ENSMUST00000228639 4113 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Mageb17-ps-201ENSMUST00000117902 919 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Mir7221-201ENSMUST00000184009 72 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm43830-201ENSMUST00000198760 1067 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm19187-201ENSMUST00000206781 892 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Gm45598-202ENSMUST00000210719 986 ntBASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Sh2b1-204ENSMUST00000205497 2854 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hfm1D3Z4R1 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
Hfm1D3Z4R1 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Hfm1D3Z4R1 Ephx2-201ENSMUST00000070515 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Hfm1D3Z4R1 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hfm1D3Z4R1 Hoxa7-201ENSMUST00000048715 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms