Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Nr1h4Q60641 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Nr1h4Q60641 Atg7-207ENSMUST00000182428 2264 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gpc2-205ENSMUST00000161827 2586 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Map2k7-206ENSMUST00000110998 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Slc35b1-201ENSMUST00000021243 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 AF529169-201ENSMUST00000044491 7202 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rab15-201ENSMUST00000021459 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Dhrs3-202ENSMUST00000105744 1226 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rab1a-202ENSMUST00000109601 1200 ntTSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm25911-201ENSMUST00000157621 56 ntBASIC12.79□□□□□ -0.36
Nr1h4Q60641 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm24158-201ENSMUST00000175263 71 ntBASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Ly6f-202ENSMUST00000189654 818 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm5425-201ENSMUST00000214125 459 ntBASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Rit2-202ENSMUST00000139924 1674 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm13589-201ENSMUST00000146404 1675 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Nxf1-211ENSMUST00000184970 5591 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Zfp467-204ENSMUST00000114559 3163 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.79□□□□□ -0.36
Nr1h4Q60641 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Nr1h4Q60641 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 AC168058.1-201ENSMUST00000219521 2282 ntBASIC12.78□□□□□ -0.36
Nr1h4Q60641 Pus7-201ENSMUST00000119946 3407 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Asap1-218ENSMUST00000177374 4582 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gria4-203ENSMUST00000163309 2338 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 0610006L08Rik-201ENSMUST00000205326 1589 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Hps3-202ENSMUST00000108321 3385 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gm13385-201ENSMUST00000121089 220 ntBASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gm24420-201ENSMUST00000176676 59 ntBASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gm8000-201ENSMUST00000188378 592 ntBASIC12.78□□□□□ -0.36
Nr1h4Q60641 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC12.78□□□□□ -0.36
Nr1h4Q60641 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Selenbp1-201ENSMUST00000090839 1712 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Selenbp2-201ENSMUST00000090848 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Atp2b2-203ENSMUST00000101045 8877 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Rinl-201ENSMUST00000059857 2871 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Arhgap33-207ENSMUST00000208538 4372 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Klhl15-201ENSMUST00000096369 3944 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Wipf3-201ENSMUST00000126637 4414 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Nr1h4Q60641 4931428F04Rik-203ENSMUST00000212219 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Nr1h4Q60641 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Usp19-204ENSMUST00000178075 4512 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Usp19-202ENSMUST00000085044 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Ablim2-201ENSMUST00000054598 3564 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Ero1lb-201ENSMUST00000071973 4239 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Nr1h4Q60641 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nr1h4Q60641 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Nr1h4Q60641 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Nr1h4Q60641 9330198N18Rik-201ENSMUST00000146702 1247 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms