Protein–RNA interactions for Protein: Q03358

Msx2, Homeobox protein MSX-2, mousemouse

Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx2Q03358 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx2Q03358 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC13□□□□□ -0.33
Msx2Q03358 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13□□□□□ -0.33
Msx2Q03358 Tmem132a-202ENSMUST00000120524 3895 ntTSL 5 BASIC13□□□□□ -0.33
Msx2Q03358 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Msx2Q03358 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Msx2Q03358 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC13□□□□□ -0.33
Msx2Q03358 Gm15459-201ENSMUST00000117405 1941 ntBASIC13□□□□□ -0.33
Msx2Q03358 Gm8355-201ENSMUST00000177767 1941 ntBASIC13□□□□□ -0.33
Msx2Q03358 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Msx2Q03358 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Ptx4-201ENSMUST00000054930 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Aifm2-202ENSMUST00000080099 1329 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Msx2Q03358 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC12.99□□□□□ -0.33
Msx2Q03358 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC12.99□□□□□ -0.33
Msx2Q03358 Gm45612-201ENSMUST00000211320 160 ntBASIC12.99□□□□□ -0.33
Msx2Q03358 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
Msx2Q03358 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Msx2Q03358 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Pgpep1-201ENSMUST00000070173 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Adamts3-204ENSMUST00000198151 1833 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Mvk-202ENSMUST00000112239 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Cep164-201ENSMUST00000117194 5541 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Msx2Q03358 Anapc7-202ENSMUST00000119792 3599 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 Kcnc2-204ENSMUST00000219301 2944 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Msx2Q03358 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC12.98□□□□□ -0.33
Msx2Q03358 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Ankrd17-201ENSMUST00000014421 10458 ntAPPRIS P4 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 AC125108.1-201ENSMUST00000218986 2330 ntBASIC12.98□□□□□ -0.33
Msx2Q03358 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Shf-202ENSMUST00000110530 910 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC12.98□□□□□ -0.33
Msx2Q03358 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm4971-201ENSMUST00000205991 1108 ntBASIC12.98□□□□□ -0.33
Msx2Q03358 Sar1b-201ENSMUST00000020653 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm18934-201ENSMUST00000216671 1044 ntBASIC12.98□□□□□ -0.33
Msx2Q03358 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Cpne1-201ENSMUST00000079312 1683 ntTSL 5 BASIC12.98□□□□□ -0.33
Msx2Q03358 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Fam187a-201ENSMUST00000100369 1563 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.98□□□□□ -0.33
Msx2Q03358 Syt8-204ENSMUST00000118276 1503 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Msx2Q03358 Aurka-203ENSMUST00000109140 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx2Q03358 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx2Q03358 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx2Q03358 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC12.97□□□□□ -0.33
Msx2Q03358 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Msx2Q03358 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Msx2Q03358 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms