Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col5a1O88207 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 1700037C18Rik-202ENSMUST00000115859 2592 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Mmp2-201ENSMUST00000034187 3078 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Txnrd3-201ENSMUST00000000828 2836 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC11.92□□□□□ -0.5
Col5a1O88207 Gm5884-201ENSMUST00000036712 1479 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Col5a1O88207 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Gm25214-201ENSMUST00000104573 129 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Gm14726-201ENSMUST00000120623 896 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Gm15276-201ENSMUST00000145953 498 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Gm454-201ENSMUST00000160126 751 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Gm45118-201ENSMUST00000208928 825 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Nsmce1-201ENSMUST00000033006 1120 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Col5a1O88207 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Cops5-201ENSMUST00000027050 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Eif4e3-201ENSMUST00000032151 2515 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Gm5639-201ENSMUST00000122305 2403 ntBASIC11.92□□□□□ -0.5
Col5a1O88207 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col5a1O88207 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col5a1O88207 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Urad-201ENSMUST00000100433 766 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.91□□□□□ -0.5
Col5a1O88207 Tax1bp3-202ENSMUST00000108477 1153 ntTSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 4930583K01Rik-201ENSMUST00000138180 925 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 Gm18393-201ENSMUST00000208349 1131 ntBASIC11.91□□□□□ -0.5
Col5a1O88207 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 AC153506.3-201ENSMUST00000219287 1029 ntTSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 Ap5z1-202ENSMUST00000196055 2965 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Col5a1O88207 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 5830418P13Rik-201ENSMUST00000143564 2178 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Fbxw9-201ENSMUST00000095220 1907 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col5a1O88207 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm14704-201ENSMUST00000120300 874 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Eif4e1b-204ENSMUST00000132005 706 ntTSL 2 BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm13850-201ENSMUST00000140465 623 ntTSL 3 BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm31256-201ENSMUST00000194705 506 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm8385-201ENSMUST00000058999 643 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Gm16278-201ENSMUST00000148064 2071 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Calcr-203ENSMUST00000168592 2064 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Col5a1O88207 Pdxk-ps-201ENSMUST00000159650 2342 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Ndufaf7-201ENSMUST00000024887 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Tollip-204ENSMUST00000151890 1753 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Psmd2-201ENSMUST00000007212 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Trib1-202ENSMUST00000118228 3081 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC11.9□□□□□ -0.5
Col5a1O88207 4933407E24Rik-201ENSMUST00000133499 969 ntTSL 2 BASIC11.9□□□□□ -0.5
Col5a1O88207 Sncb-202ENSMUST00000134110 722 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC11.9□□□□□ -0.5
Col5a1O88207 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Mir6958-201ENSMUST00000184207 73 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Snhg8-201ENSMUST00000196466 448 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Gm44551-201ENSMUST00000208804 171 ntBASIC11.9□□□□□ -0.5
Col5a1O88207 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC11.9□□□□□ -0.5
Col5a1O88207 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC11.9□□□□□ -0.5
Col5a1O88207 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col5a1O88207 AC135669.1-202ENSMUST00000216742 540 ntBASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 75.2 ms