Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Tiparp-201ENSMUST00000047906 4191 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
RTRAFQ9CQE8 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Klhl30-201ENSMUST00000027533 3089 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gm5385-201ENSMUST00000118988 1559 ntBASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Pck2-205ENSMUST00000226352 2784 ntBASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Tnfaip8-207ENSMUST00000148159 1921 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 H2-Q6-202ENSMUST00000174699 2085 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Creb3-201ENSMUST00000102944 1884 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Zfp354c-201ENSMUST00000000632 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gm6184-201ENSMUST00000120403 1261 ntBASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Psma6-204ENSMUST00000163070 787 ntTSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Cep170b-201ENSMUST00000092279 3817 ntTSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Neu2-204ENSMUST00000165109 1824 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Rtp3-201ENSMUST00000084922 1425 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
RTRAFQ9CQE8 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Ap1s2-201ENSMUST00000033734 1785 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Rbm46-201ENSMUST00000048647 1794 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 9130011E15Rik-201ENSMUST00000045396 2896 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Naaladl1-201ENSMUST00000044451 2491 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Gm20633-201ENSMUST00000176742 2831 ntBASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.67
RTRAFQ9CQE8 Cd80-201ENSMUST00000099816 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Alox12e-201ENSMUST00000019051 2422 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Ltbp2-201ENSMUST00000002073 6769 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 R3hcc1-206ENSMUST00000216152 1467 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 CT025626.1-201ENSMUST00000223735 1455 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Tmem55a-201ENSMUST00000029875 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Mir874-201ENSMUST00000104769 76 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm30097-202ENSMUST00000194580 329 ntTSL 3 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm42670-201ENSMUST00000201816 1292 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Olfr742-202ENSMUST00000213935 2117 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 AV026068-213ENSMUST00000223675 1171 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Rps4l-201ENSMUST00000071745 943 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm10176-201ENSMUST00000159707 2264 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Fig4-201ENSMUST00000043814 3282 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Syt7-205ENSMUST00000224135 1557 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Alkbh4-202ENSMUST00000100568 1714 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Hoxd3os1-202ENSMUST00000139005 1701 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Gm4782-201ENSMUST00000168705 2046 ntBASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
RTRAFQ9CQE8 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC10.89□□□□□ -0.67
Retrieved 100 of 76,532 protein–RNA pairs in 48.2 ms