Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm44065-201ENSMUST00000203184 3527 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Diaph1-204ENSMUST00000115631 5741 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 AI839979-202ENSMUST00000201790 1539 ntTSL 2 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Scg3-202ENSMUST00000213324 2152 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Kansl3-205ENSMUST00000186470 2801 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Fam46a-201ENSMUST00000034802 5479 ntAPPRIS P3 TSL 3 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm15851-201ENSMUST00000160564 662 ntTSL 3 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm8515-201ENSMUST00000194852 576 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm9908-201ENSMUST00000211534 448 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm6983-201ENSMUST00000214912 628 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 AC155252.1-201ENSMUST00000226462 1208 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Rn7sk-201ENSMUST00000083103 331 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm26315-201ENSMUST00000083890 321 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Otop2-202ENSMUST00000106544 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Mslnl-201ENSMUST00000047098 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Kmt2e-202ENSMUST00000115128 7317 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Gm37795-201ENSMUST00000194216 2459 ntBASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Ciz1-203ENSMUST00000113332 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Rasgef1b-209ENSMUST00000168092 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Rasgef1b-201ENSMUST00000031276 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Eif4g1-205ENSMUST00000115461 5507 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Nrf1-211ENSMUST00000115212 3584 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Brf1Q8CFK2 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Adsl-206ENSMUST00000168756 1439 ntTSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Hsd3b4-202ENSMUST00000196861 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Gm10681-201ENSMUST00000058728 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Mbtd1-201ENSMUST00000063645 2138 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Ntrk2-209ENSMUST00000225950 2640 ntBASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Dapk1-201ENSMUST00000044083 5304 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Phldb1-214ENSMUST00000147495 5424 ntAPPRIS P5 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Dnpep-209ENSMUST00000187836 1862 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Gngt2-201ENSMUST00000036088 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Rgs6-204ENSMUST00000185674 1362 ntTSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Selenoh-202ENSMUST00000102647 654 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC16.19■□□□□ 0.18
Brf1Q8CFK2 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Gm4610-201ENSMUST00000198222 905 ntTSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 AC154239.3-201ENSMUST00000226933 674 ntBASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Emc4-201ENSMUST00000028551 983 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Slc6a21-206ENSMUST00000210861 2838 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Sall4-202ENSMUST00000075044 2534 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Aoc2-202ENSMUST00000107264 2230 ntTSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Hsph1-205ENSMUST00000201452 3140 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Gm9115-201ENSMUST00000120192 1348 ntBASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Ube3a-216ENSMUST00000202945 3889 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Brf1Q8CFK2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Palld-203ENSMUST00000121493 5445 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Minos1-203ENSMUST00000143971 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Mlx-202ENSMUST00000107302 1826 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Gm15371-201ENSMUST00000117057 784 ntBASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Ecscr-204ENSMUST00000133064 1055 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Brf1Q8CFK2 Gm2495-201ENSMUST00000191160 466 ntBASIC16.18■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms