Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Lsm1Q8VC85 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
Lsm1Q8VC85 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Lsm1Q8VC85 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.58■□□□□ 0.89
Lsm1Q8VC85 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC20.58■□□□□ 0.88
Lsm1Q8VC85 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Lsm1Q8VC85 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Lsm1Q8VC85 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Lsm1Q8VC85 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Lsm1Q8VC85 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lsm1Q8VC85 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Lsm1Q8VC85 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Ffar4-201ENSMUST00000067098 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Lsm1Q8VC85 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lsm1Q8VC85 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Lsm1Q8VC85 Arf4-201ENSMUST00000022429 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Lsm1Q8VC85 Gm38160-201ENSMUST00000193090 2499 ntBASIC20.52■□□□□ 0.88
Lsm1Q8VC85 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lsm1Q8VC85 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lsm1Q8VC85 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lsm1Q8VC85 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Lsm1Q8VC85 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Clpp-201ENSMUST00000002735 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Lsm1Q8VC85 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Lsm1Q8VC85 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Lsm1Q8VC85 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Lsm1Q8VC85 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lsm1Q8VC85 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Lsm1Q8VC85 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Lsm1Q8VC85 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Lsm1Q8VC85 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC20.46■□□□□ 0.87
Lsm1Q8VC85 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Lsm1Q8VC85 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Lsm1Q8VC85 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Lsm1Q8VC85 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Lsm1Q8VC85 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Lsm1Q8VC85 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Lsm1Q8VC85 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 397.3 ms