Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.91■□□□□ 0.94
Cacna1bO55017 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.91■□□□□ 0.94
Cacna1bO55017 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC20.91■□□□□ 0.94
Cacna1bO55017 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Cacna1bO55017 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.9■□□□□ 0.94
Cacna1bO55017 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cacna1bO55017 Nsd1-206ENSMUST00000224918 1001 ntBASIC20.9■□□□□ 0.94
Cacna1bO55017 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cacna1bO55017 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Cacna1bO55017 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
Cacna1bO55017 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cacna1bO55017 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Cacna1bO55017 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC20.88■□□□□ 0.93
Cacna1bO55017 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cacna1bO55017 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cacna1bO55017 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.88■□□□□ 0.93
Cacna1bO55017 Gm29394-204ENSMUST00000177504 448 ntAPPRIS ALT2 TSL 3 BASIC20.88■□□□□ 0.93
Cacna1bO55017 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cacna1bO55017 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.88■□□□□ 0.93
Cacna1bO55017 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cacna1bO55017 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Cacna1bO55017 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC20.88■□□□□ 0.93
Cacna1bO55017 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Cacna1bO55017 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cacna1bO55017 Rab3ip-203ENSMUST00000219109 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cacna1bO55017 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cacna1bO55017 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cacna1bO55017 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC20.87■□□□□ 0.93
Cacna1bO55017 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
Cacna1bO55017 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 AC117245.4-201ENSMUST00000217388 1646 ntBASIC20.86■□□□□ 0.93
Cacna1bO55017 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC20.86■□□□□ 0.93
Cacna1bO55017 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC20.86■□□□□ 0.93
Cacna1bO55017 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Cacna1bO55017 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Cacna1bO55017 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Cacna1bO55017 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Cacna1bO55017 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC20.85■□□□□ 0.93
Cacna1bO55017 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC20.84■□□□□ 0.93
Cacna1bO55017 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Cacna1bO55017 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.84■□□□□ 0.93
Cacna1bO55017 Txnrd2-216ENSMUST00000206606 1809 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cacna1bO55017 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Cacna1bO55017 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Cacna1bO55017 Gm18284-201ENSMUST00000172604 624 ntBASIC20.84■□□□□ 0.93
Cacna1bO55017 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cacna1bO55017 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cacna1bO55017 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Cacna1bO55017 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.83■□□□□ 0.93
Cacna1bO55017 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cacna1bO55017 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cacna1bO55017 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.83■□□□□ 0.93
Cacna1bO55017 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cacna1bO55017 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Cacna1bO55017 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC20.83■□□□□ 0.92
Cacna1bO55017 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
Cacna1bO55017 Gm8495-201ENSMUST00000188740 694 ntBASIC20.82■□□□□ 0.92
Cacna1bO55017 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Cacna1bO55017 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Cacna1bO55017 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Cacna1bO55017 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Cacna1bO55017 Gm6139-201ENSMUST00000079261 882 ntBASIC20.81■□□□□ 0.92
Cacna1bO55017 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Cacna1bO55017 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cacna1bO55017 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cacna1bO55017 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Cacna1bO55017 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Cacna1bO55017 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cacna1bO55017 Cdk18-202ENSMUST00000112362 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Cacna1bO55017 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC20.78■□□□□ 0.92
Cacna1bO55017 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.78■□□□□ 0.92
Cacna1bO55017 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cacna1bO55017 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Cacna1bO55017 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
Cacna1bO55017 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Cacna1bO55017 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC20.78■□□□□ 0.92
Cacna1bO55017 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cacna1bO55017 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
Cacna1bO55017 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cacna1bO55017 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Cacna1bO55017 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cacna1bO55017 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC20.77■□□□□ 0.92
Cacna1bO55017 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Cacna1bO55017 Sccpdh-201ENSMUST00000040538 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cacna1bO55017 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cacna1bO55017 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
Cacna1bO55017 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Cacna1bO55017 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Cacna1bO55017 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.75■□□□□ 0.91
Cacna1bO55017 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Cacna1bO55017 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms