Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Tdp2-203ENSMUST00000223804 1136 ntBASIC17.79■□□□□ 0.44
Hmgb3O54879 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb3O54879 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb3O54879 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.78■□□□□ 0.44
Hmgb3O54879 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb3O54879 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb3O54879 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb3O54879 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC17.78■□□□□ 0.44
Hmgb3O54879 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb3O54879 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Hmgb3O54879 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Hmgb3O54879 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb3O54879 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Hmgb3O54879 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Hmgb3O54879 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb3O54879 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb3O54879 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb3O54879 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Hmgb3O54879 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgb3O54879 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Hmgb3O54879 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC17.77■□□□□ 0.43
Hmgb3O54879 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC17.76■□□□□ 0.43
Hmgb3O54879 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb3O54879 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb3O54879 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Hmgb3O54879 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Hmgb3O54879 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Hmgb3O54879 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb3O54879 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Hmgb3O54879 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
Hmgb3O54879 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb3O54879 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Hmgb3O54879 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb3O54879 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb3O54879 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb3O54879 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Hmgb3O54879 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb3O54879 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb3O54879 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Hmgb3O54879 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
Hmgb3O54879 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb3O54879 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Hmgb3O54879 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Hmgb3O54879 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb3O54879 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb3O54879 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Hmgb3O54879 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC17.71■□□□□ 0.43
Hmgb3O54879 Gm37136-201ENSMUST00000194368 194 ntBASIC17.71■□□□□ 0.43
Hmgb3O54879 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb3O54879 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Hmgb3O54879 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb3O54879 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb3O54879 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb3O54879 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Hmgb3O54879 Coq2-201ENSMUST00000031262 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Hmgb3O54879 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Hmgb3O54879 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
Hmgb3O54879 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC17.68■□□□□ 0.42
Hmgb3O54879 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Grm2-203ENSMUST00000201681 2111 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Hmgb3O54879 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Hmgb3O54879 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb3O54879 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Hmgb3O54879 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb3O54879 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb3O54879 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb3O54879 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Hmgb3O54879 AC153962.1-201ENSMUST00000218530 1948 ntBASIC17.66■□□□□ 0.42
Hmgb3O54879 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb3O54879 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb3O54879 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb3O54879 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.66■□□□□ 0.42
Hmgb3O54879 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Hmgb3O54879 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb3O54879 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Hmgb3O54879 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Hmgb3O54879 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb3O54879 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb3O54879 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Hmgb3O54879 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb3O54879 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb3O54879 Ube2h-202ENSMUST00000102993 4657 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Hmgb3O54879 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.42
Hmgb3O54879 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Hmgb3O54879 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC17.64■□□□□ 0.41
Hmgb3O54879 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Hmgb3O54879 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms