Protein–RNA interactions for Protein: Q8BL06

Usp54, Inactive ubiquitin carboxyl-terminal hydrolase 54, mousemouse

Known RBP Predictions only

Length 1,588 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp54Q8BL06 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp54Q8BL06 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Usp54Q8BL06 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Hoxd3-203ENSMUST00000111983 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Gm39404-201ENSMUST00000216350 313 ntBASIC18.77■□□□□ 0.6
Usp54Q8BL06 Slc35e2-201ENSMUST00000043829 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Zfp146-201ENSMUST00000062181 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Gm11696-203ENSMUST00000188296 1793 ntTSL 3 BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Nup93-201ENSMUST00000079961 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Usp54Q8BL06 Whamm-203ENSMUST00000209044 1879 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Usp54Q8BL06 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm22902-201ENSMUST00000158488 302 ntBASIC18.76■□□□□ 0.59
Usp54Q8BL06 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm28139-201ENSMUST00000189480 643 ntTSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm45691-201ENSMUST00000206905 1120 ntBASIC18.76■□□□□ 0.59
Usp54Q8BL06 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm4782-201ENSMUST00000168705 2046 ntBASIC18.76■□□□□ 0.59
Usp54Q8BL06 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Stx17-201ENSMUST00000064765 1531 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Tmem19-203ENSMUST00000217884 2799 ntTSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Tmem40-205ENSMUST00000166254 811 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Gm8913-201ENSMUST00000209491 641 ntBASIC18.76■□□□□ 0.59
Usp54Q8BL06 AC167013.1-201ENSMUST00000228592 202 ntBASIC18.76■□□□□ 0.59
Usp54Q8BL06 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Usp54Q8BL06 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Gm37736-201ENSMUST00000193564 2802 ntBASIC18.75■□□□□ 0.59
Usp54Q8BL06 B4galt3-202ENSMUST00000111313 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Bcat1-202ENSMUST00000048252 1642 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Tfap2c-206ENSMUST00000170744 2776 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Gm22334-201ENSMUST00000158070 133 ntBASIC18.75■□□□□ 0.59
Usp54Q8BL06 AC113031.8-201ENSMUST00000227856 631 ntBASIC18.75■□□□□ 0.59
Usp54Q8BL06 AC123665.1-201ENSMUST00000228204 438 ntBASIC18.75■□□□□ 0.59
Usp54Q8BL06 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Slc25a5-ps-202ENSMUST00000223716 1786 ntBASIC18.75■□□□□ 0.59
Usp54Q8BL06 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Usp54Q8BL06 4933434M16Rik-202ENSMUST00000153429 1940 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 2900069G24Rik-201ENSMUST00000192780 1311 ntBASIC18.74■□□□□ 0.59
Usp54Q8BL06 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Gm16296-201ENSMUST00000159905 325 ntBASIC18.74■□□□□ 0.59
Usp54Q8BL06 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Gm17087-201ENSMUST00000184183 471 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Usp54Q8BL06 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Gm19208-201ENSMUST00000213861 912 ntBASIC18.74■□□□□ 0.59
Usp54Q8BL06 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Usp54Q8BL06 Sh2d5-202ENSMUST00000105824 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 69.3 ms