Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Tlk2-209ENSMUST00000145048 2776 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Tgm1-203ENSMUST00000178034 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Rxrg-204ENSMUST00000111386 1705 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Slc6a19os-201ENSMUST00000022049 1532 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Olfr95-202ENSMUST00000216318 4917 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Nif3l1-206ENSMUST00000171597 2098 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Nptn-206ENSMUST00000176557 1898 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Slc25a54-201ENSMUST00000029478 1673 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Ahcyl2-205ENSMUST00000125911 2039 ntTSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Rab3d-201ENSMUST00000115351 3835 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
Rfx3P48381 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Gm26839-201ENSMUST00000180686 842 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Mir6956-201ENSMUST00000183598 62 ntBASIC12.17□□□□□ -0.46
Rfx3P48381 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC12.17□□□□□ -0.46
Rfx3P48381 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC12.17□□□□□ -0.46
Rfx3P48381 AC159114.1-201ENSMUST00000220349 266 ntBASIC12.17□□□□□ -0.46
Rfx3P48381 Rbfox2-208ENSMUST00000227930 1218 ntBASIC12.17□□□□□ -0.46
Rfx3P48381 Olfr283-201ENSMUST00000057386 1102 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Rfx3P48381 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Rfx3P48381 Ap4b1-203ENSMUST00000106823 2741 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
Rfx3P48381 Ddx24-202ENSMUST00000110001 3063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Clcn3-204ENSMUST00000110301 4099 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Entpd2-201ENSMUST00000028328 1935 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Phactr3-205ENSMUST00000108917 4858 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Zscan22-203ENSMUST00000119989 2087 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Casc4-202ENSMUST00000089912 3602 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Ago1-201ENSMUST00000097888 7227 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Gm26777-201ENSMUST00000181852 2573 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Rfx3P48381 Zkscan14-203ENSMUST00000198959 2243 ntBASIC12.17□□□□□ -0.46
Rfx3P48381 Gm5939-201ENSMUST00000119613 2874 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Pex12-207ENSMUST00000176518 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Arcn1-201ENSMUST00000034607 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Il34-204ENSMUST00000150680 1796 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Tmem186-201ENSMUST00000052505 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Gpr19-204ENSMUST00000116515 2075 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Gm12585-201ENSMUST00000117307 290 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Gm13616-201ENSMUST00000120600 222 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Gm7820-201ENSMUST00000121012 1052 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Gm3436-201ENSMUST00000179930 840 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Hspb2-201ENSMUST00000042790 773 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Mir497b-201ENSMUST00000093601 125 ntBASIC12.16□□□□□ -0.46
Rfx3P48381 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Sbsn-201ENSMUST00000080518 2221 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Togaram2-205ENSMUST00000153445 3302 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
Rfx3P48381 Gm26681-201ENSMUST00000180851 1440 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Rfx3P48381 Msantd3-201ENSMUST00000061135 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Bptf-203ENSMUST00000106763 12036 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
Rfx3P48381 Ptprk-203ENSMUST00000218359 4669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Sh3bp2-207ENSMUST00000179943 2935 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Rfx3P48381 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms