Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Cpeb1-201ENSMUST00000098331 3111 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
Lire1P11260 Gm24694-201ENSMUST00000180054 110 ntBASIC12.83□□□□□ -0.36
Lire1P11260 Gm27663-201ENSMUST00000184839 110 ntBASIC12.83□□□□□ -0.36
Lire1P11260 Ighv5-13-201ENSMUST00000193550 290 ntBASIC12.83□□□□□ -0.36
Lire1P11260 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC12.83□□□□□ -0.36
Lire1P11260 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Tbc1d22a-201ENSMUST00000063414 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC12.83□□□□□ -0.36
Lire1P11260 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Fbln1-201ENSMUST00000057410 3659 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC12.83□□□□□ -0.36
Lire1P11260 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
Lire1P11260 Ppp2r5b-201ENSMUST00000025695 2742 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm37648-201ENSMUST00000192072 2563 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Reln-207ENSMUST00000161356 11699 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Lire1P11260 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Pex11b-207ENSMUST00000165842 1562 ntTSL 2 BASIC12.82□□□□□ -0.36
Lire1P11260 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm44086-201ENSMUST00000203251 2349 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Dhx29-201ENSMUST00000038574 4682 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Ankzf1-208ENSMUST00000152233 2739 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Apip-201ENSMUST00000011055 919 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Mtif3-203ENSMUST00000110564 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Mtif3-204ENSMUST00000110566 1134 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Rab4a-201ENSMUST00000117702 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm15653-201ENSMUST00000119247 907 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
Lire1P11260 Gm9719-201ENSMUST00000162765 543 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Ndufv3-205ENSMUST00000191598 642 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 Ighv8-7-201ENSMUST00000194349 297 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Gm9794-201ENSMUST00000202370 423 ntBASIC12.82□□□□□ -0.36
Lire1P11260 AC124732.1-201ENSMUST00000221551 910 ntBASIC12.82□□□□□ -0.36
Lire1P11260 AC090659.2-201ENSMUST00000225378 1186 ntBASIC12.82□□□□□ -0.36
Lire1P11260 Ramp3-201ENSMUST00000045374 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Trim55-201ENSMUST00000029139 2595 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Lire1P11260 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Rtl6-201ENSMUST00000069476 4426 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Lire1P11260 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm8334-201ENSMUST00000112755 1662 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 8430429K09Rik-204ENSMUST00000146456 1675 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 1700113H08Rik-201ENSMUST00000169849 1332 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Ccdc155-201ENSMUST00000121017 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Foxred1-202ENSMUST00000127996 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Nrd1-202ENSMUST00000102736 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
Lire1P11260 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Suox-201ENSMUST00000054764 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC12.82□□□□□ -0.36
Lire1P11260 Tmem38a-201ENSMUST00000034244 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Car10-206ENSMUST00000107863 3334 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 2410002F23Rik-206ENSMUST00000107950 3336 ntAPPRIS P2 TSL 2 BASIC12.82□□□□□ -0.36
Lire1P11260 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Pfkl-201ENSMUST00000020522 3730 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Lire1P11260 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Tmed5-202ENSMUST00000061203 2194 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Ap2a1-204ENSMUST00000167930 3376 ntTSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Arhgef15-203ENSMUST00000108671 4372 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Mier3-203ENSMUST00000109272 5279 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Tmem215-202ENSMUST00000179526 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.81□□□□□ -0.36
Lire1P11260 Teddm2-202ENSMUST00000123490 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Lire1P11260 Gm24543-201ENSMUST00000103867 82 ntBASIC12.81□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms