Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Gm10327-201ENSMUST00000105222 1002 ntBASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Cox16-202ENSMUST00000110340 668 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Smim17-203ENSMUST00000161855 664 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Gm42550-201ENSMUST00000201553 960 ntBASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Tmco5b-201ENSMUST00000040856 1237 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 1700120B22Rik-201ENSMUST00000054837 464 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
Brf1Q8CFK2 6030458C11Rik-202ENSMUST00000227299 3206 ntBASIC16.27■□□□□ 0.19
Brf1Q8CFK2 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Brf1Q8CFK2 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Brf1Q8CFK2 Dgke-201ENSMUST00000000285 5208 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Brf1Q8CFK2 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Brf1Q8CFK2 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gsn-201ENSMUST00000028239 2653 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Bscl2-210ENSMUST00000171649 1962 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tbx6-202ENSMUST00000172352 1529 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tbc1d5-205ENSMUST00000224528 4764 ntAPPRIS ALT2 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gm16342-201ENSMUST00000124025 1025 ntBASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Adgrv1-205ENSMUST00000126444 3823 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gm23984-201ENSMUST00000157139 203 ntBASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Bik-201ENSMUST00000016902 943 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Dkkl1-204ENSMUST00000210741 662 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Gm7446-201ENSMUST00000221035 1240 ntBASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tmem116-201ENSMUST00000031405 1288 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tnks1bp1-202ENSMUST00000111605 5747 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Cpxm2-201ENSMUST00000033149 3498 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Tjap1-202ENSMUST00000164342 2559 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Pisd-202ENSMUST00000071829 1986 ntTSL 5 BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Rita1-201ENSMUST00000031599 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Brf1Q8CFK2 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Traf1-202ENSMUST00000113064 2325 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm14371-201ENSMUST00000138925 1518 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm13730-201ENSMUST00000121036 1462 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 H2-Pa-201ENSMUST00000182803 626 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm38144-201ENSMUST00000192790 465 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm38223-201ENSMUST00000194484 695 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm18018-201ENSMUST00000198273 408 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Nme2-201ENSMUST00000021217 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 AC159006.1-201ENSMUST00000226396 258 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Wdyhv1-206ENSMUST00000227142 786 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Gm6180-201ENSMUST00000065243 498 ntBASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Vill-203ENSMUST00000126251 1411 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Slc4a5-201ENSMUST00000039212 5123 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Cyb561d1-202ENSMUST00000106654 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Brf1Q8CFK2 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Rps6ka4-202ENSMUST00000170516 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Rps6ka4-201ENSMUST00000025903 3105 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Slc25a46-201ENSMUST00000060396 4371 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Icam4-201ENSMUST00000001040 971 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
Brf1Q8CFK2 Gm12091-201ENSMUST00000146791 830 ntBASIC16.24■□□□□ 0.19
Brf1Q8CFK2 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms