Protein–RNA interactions for Protein: Q8C120

Sh3rf3, SH3 domain-containing RING finger protein 3, mousemouse

Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf3Q8C120 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Sh3rf3Q8C120 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC14.07□□□□□ -0.16
Sh3rf3Q8C120 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Sh3rf3Q8C120 Rnf224-202ENSMUST00000205192 1707 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Sh3rf3Q8C120 AC117194.1-201ENSMUST00000224847 3002 ntBASIC14.07□□□□□ -0.16
Sh3rf3Q8C120 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Phf21b-201ENSMUST00000016768 3377 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Spg7-202ENSMUST00000125975 2408 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Knop1-203ENSMUST00000106549 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Dbndd1-203ENSMUST00000177240 1463 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm3365-201ENSMUST00000216296 1480 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Atp2a3-202ENSMUST00000108484 4467 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Pnkp-201ENSMUST00000003044 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Ntrk2-204ENSMUST00000224259 3049 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Bola2-202ENSMUST00000106369 642 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm15770-201ENSMUST00000117498 584 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm43094-201ENSMUST00000196549 921 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm43691-201ENSMUST00000196625 697 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm5279-201ENSMUST00000199575 745 ntBASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Nudt18-201ENSMUST00000089049 3926 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Snrpa-202ENSMUST00000122202 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Tdrd6-203ENSMUST00000168073 7062 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm29358-201ENSMUST00000186510 1734 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Polr3g-201ENSMUST00000048993 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Xlr-202ENSMUST00000067782 1860 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Paqr8-202ENSMUST00000167119 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm16244-201ENSMUST00000159313 2327 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Ptpn6-201ENSMUST00000004377 2308 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Sh3rf3Q8C120 Gm14371-201ENSMUST00000138925 1518 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Umad1-204ENSMUST00000159433 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Syt7-205ENSMUST00000224135 1557 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 AC139054.1-201ENSMUST00000226898 1598 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 AC139350.1-201ENSMUST00000227064 1594 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Eln-201ENSMUST00000015138 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Smg5-201ENSMUST00000001451 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Nfkb2-201ENSMUST00000073116 3054 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Nedd8-201ENSMUST00000010520 824 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Pdpn-202ENSMUST00000119654 762 ntAPPRIS ALT2 TSL 3 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Tnni1-205ENSMUST00000148201 1150 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Gm15948-201ENSMUST00000150616 403 ntTSL 3 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Tnni1-206ENSMUST00000152075 1038 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Tnni1-207ENSMUST00000152208 1105 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 AC154595.3-201ENSMUST00000224579 384 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Gm7899-201ENSMUST00000192935 1897 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Gm37795-201ENSMUST00000194216 2459 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Vrtn-201ENSMUST00000095551 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Ints13-201ENSMUST00000032427 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 AC153366.2-201ENSMUST00000219461 1984 ntBASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Pafah1b1-202ENSMUST00000102520 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Sh3rf3Q8C120 F830212C03Rik-201ENSMUST00000191701 2285 ntBASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Scg3-201ENSMUST00000034699 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Mob1a-202ENSMUST00000055261 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Kbtbd6-201ENSMUST00000100359 2982 ntAPPRIS ALT2 BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC14.04□□□□□ -0.16
Sh3rf3Q8C120 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 67.3 ms