Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Col9a3-201ENSMUST00000103059 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Fam43a-201ENSMUST00000059078 3075 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Rfx3P48381 Ginm1-204ENSMUST00000124838 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 AC117194.1-201ENSMUST00000224847 3002 ntBASIC12.2□□□□□ -0.46
Rfx3P48381 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC12.2□□□□□ -0.46
Rfx3P48381 Armcx1-204ENSMUST00000113198 2085 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Rfx3P48381 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Rfx3P48381 Rapsn-203ENSMUST00000111446 1458 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Ric8b-202ENSMUST00000095385 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Rfx3P48381 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Rfx3P48381 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Tmem200a-201ENSMUST00000066049 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Cfp-201ENSMUST00000001156 1636 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 AC159196.2-201ENSMUST00000224082 1622 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Cep68-201ENSMUST00000050611 4804 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Gm36745-201ENSMUST00000213455 1594 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Bcas3-201ENSMUST00000074875 2814 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Mir698-201ENSMUST00000102164 109 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 Igfbp4-204ENSMUST00000140772 742 ntTSL 2 BASIC12.19□□□□□ -0.46
Rfx3P48381 Gm4804-201ENSMUST00000182234 999 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 Gm6283-201ENSMUST00000182369 1000 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 Gm27618-201ENSMUST00000183671 60 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 Gm37117-201ENSMUST00000194238 589 ntTSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Gm44719-201ENSMUST00000206404 149 ntBASIC12.19□□□□□ -0.46
Rfx3P48381 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC12.19□□□□□ -0.46
Rfx3P48381 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Fam222b-201ENSMUST00000073705 3258 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Actn4-211ENSMUST00000217157 3530 ntTSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Hnrnph2-201ENSMUST00000050331 1701 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Evi5l-203ENSMUST00000176149 3938 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Rfx3P48381 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Rfx3P48381 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Rfx3P48381 Gnb5-202ENSMUST00000213990 1803 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Dhx30-201ENSMUST00000062368 3806 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Palb2-201ENSMUST00000063587 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Opa3-201ENSMUST00000063976 3366 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Slc19a2-201ENSMUST00000044021 3571 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.18□□□□□ -0.46
Rfx3P48381 Tceanc2-202ENSMUST00000057043 6431 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Pias3-202ENSMUST00000107076 2858 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Fzd1-201ENSMUST00000054294 4197 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Rfx3P48381 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm5320-201ENSMUST00000207163 1519 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm10327-201ENSMUST00000105222 1002 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm14767-201ENSMUST00000121559 586 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Gm17837-201ENSMUST00000186435 985 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm5069-202ENSMUST00000192714 1011 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Gm37277-201ENSMUST00000194052 1111 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Gm44344-201ENSMUST00000200287 129 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Tmem129-204ENSMUST00000200849 657 ntTSL 3 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm20488-201ENSMUST00000201641 2996 ntTSL 2 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm45706-201ENSMUST00000213063 2136 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Gm6888-201ENSMUST00000221983 706 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Ccdc88c-204ENSMUST00000223097 1253 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 AC166997.1-201ENSMUST00000225122 572 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Myl3-201ENSMUST00000079784 937 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Sdha-201ENSMUST00000022062 2900 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Epb41l2-201ENSMUST00000053748 4385 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Alx1-201ENSMUST00000040859 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Tecpr1-201ENSMUST00000085701 5106 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Zfp977-201ENSMUST00000173283 1425 ntAPPRIS P1 TSL 2 BASIC12.18□□□□□ -0.46
Rfx3P48381 Gm44891-201ENSMUST00000208817 2223 ntBASIC12.18□□□□□ -0.46
Rfx3P48381 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Rfx3P48381 Lmod3-201ENSMUST00000095655 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms