Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Sirt2-202ENSMUST00000122915 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
Col1a1P11087 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
Col1a1P11087 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC15.59■□□□□ 0.09
Col1a1P11087 Gm5950-201ENSMUST00000213337 772 ntBASIC15.59■□□□□ 0.09
Col1a1P11087 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
Col1a1P11087 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Gad1-205ENSMUST00000130998 1705 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
Col1a1P11087 Gm7899-201ENSMUST00000192935 1897 ntBASIC15.58■□□□□ 0.09
Col1a1P11087 Nol4-208ENSMUST00000164893 2175 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.08
Col1a1P11087 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
Col1a1P11087 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC15.58■□□□□ 0.08
Col1a1P11087 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Myl4-202ENSMUST00000106956 900 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Gm11930-201ENSMUST00000117788 190 ntBASIC15.58■□□□□ 0.08
Col1a1P11087 Lamtor2-202ENSMUST00000119002 568 ntTSL 2 BASIC15.58■□□□□ 0.08
Col1a1P11087 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC15.58■□□□□ 0.08
Col1a1P11087 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Col1a1P11087 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC15.58■□□□□ 0.08
Col1a1P11087 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Gm34767-201ENSMUST00000191813 1062 ntBASIC15.58■□□□□ 0.08
Col1a1P11087 Gm5846-201ENSMUST00000193146 1414 ntBASIC15.58■□□□□ 0.08
Col1a1P11087 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC15.58■□□□□ 0.08
Col1a1P11087 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Mpzl2-205ENSMUST00000217097 1175 ntTSL 5 BASIC15.58■□□□□ 0.08
Col1a1P11087 Gm34466-201ENSMUST00000222218 505 ntTSL 2 BASIC15.58■□□□□ 0.08
Col1a1P11087 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Col1a1P11087 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC15.57■□□□□ 0.08
Col1a1P11087 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Psmd11-201ENSMUST00000017572 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC15.57■□□□□ 0.08
Col1a1P11087 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Col1a1P11087 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Snhg17-206ENSMUST00000152125 1046 ntTSL 3 BASIC15.57■□□□□ 0.08
Col1a1P11087 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Rsph1-201ENSMUST00000024832 1164 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC15.57■□□□□ 0.08
Col1a1P11087 Dnmt3l-208ENSMUST00000151242 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Rnf220-202ENSMUST00000094853 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Atxn7l1-202ENSMUST00000090597 2563 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Col1a1P11087 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Col1a1P11087 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Col1a1P11087 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Serpinb6d-201ENSMUST00000059637 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Sf3a2-203ENSMUST00000148665 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Gm8228-201ENSMUST00000189949 2192 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
Col1a1P11087 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Gm14109-201ENSMUST00000118814 309 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm14208-201ENSMUST00000119645 678 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm12201-201ENSMUST00000120657 1234 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm15547-201ENSMUST00000122152 333 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm24514-201ENSMUST00000174961 285 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm27046-201ENSMUST00000182160 463 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC15.56■□□□□ 0.08
Col1a1P11087 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC15.56■□□□□ 0.08
Col1a1P11087 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Sfta3-ps-201ENSMUST00000218376 2128 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Clcnkb-202ENSMUST00000105788 2490 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Col1a1P11087 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Gm44775-201ENSMUST00000207266 1456 ntBASIC15.56■□□□□ 0.08
Col1a1P11087 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Col1a1P11087 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 49.1 ms