Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Nde1-203ENSMUST00000117958 1551 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Dgki-202ENSMUST00000090314 3784 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Col5a1O88207 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Cabp2-201ENSMUST00000159148 1030 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Gm5051-201ENSMUST00000204085 485 ntBASIC11.99□□□□□ -0.49
Col5a1O88207 Brk1-201ENSMUST00000035725 1095 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Ndufa3-201ENSMUST00000076657 515 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Col5a1O88207 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Cox10-201ENSMUST00000049091 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Col5a1O88207 Trpc1-204ENSMUST00000189137 4559 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Endou-201ENSMUST00000023105 2404 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col5a1O88207 Ccne2-201ENSMUST00000029866 3006 ntAPPRIS ALT1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Gm8108-202ENSMUST00000170207 1961 ntAPPRIS P5 TSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Cryab-201ENSMUST00000034562 946 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Ell3-202ENSMUST00000116432 1674 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Col5a1O88207 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Lexm-204ENSMUST00000189032 1549 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.98□□□□□ -0.49
Col5a1O88207 Esrrb-202ENSMUST00000110203 2363 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Slc4a1ap-201ENSMUST00000114533 2424 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Scfd2-203ENSMUST00000113542 2279 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 6330537M06Rik-201ENSMUST00000212384 1642 ntBASIC11.98□□□□□ -0.49
Col5a1O88207 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Got1-201ENSMUST00000026196 2058 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Cd300lf-202ENSMUST00000106561 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Fhl4-202ENSMUST00000216889 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC11.98□□□□□ -0.49
Col5a1O88207 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col5a1O88207 Shmt1-201ENSMUST00000018744 2858 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm12208-201ENSMUST00000122004 163 ntBASIC11.97□□□□□ -0.49
Col5a1O88207 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm9678-201ENSMUST00000198979 1149 ntBASIC11.97□□□□□ -0.49
Col5a1O88207 Gm2511-202ENSMUST00000206158 455 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC11.97□□□□□ -0.49
Col5a1O88207 Krtap19-9a-201ENSMUST00000062005 168 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
Col5a1O88207 Gtf3c5-202ENSMUST00000113889 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Cd81-201ENSMUST00000037941 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Mecr-201ENSMUST00000030742 1337 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 Spef1-202ENSMUST00000110218 2600 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gpr4-201ENSMUST00000060225 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.97□□□□□ -0.49
Col5a1O88207 Dclk2-206ENSMUST00000193632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Col5a1O88207 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Suclg1-201ENSMUST00000064740 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col5a1O88207 Gm10434-201ENSMUST00000101158 471 ntBASIC11.97□□□□□ -0.49
Col5a1O88207 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC11.97□□□□□ -0.49
Col5a1O88207 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms