Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm18584-201ENSMUST00000203098 964 ntBASIC15.77■□□□□ 0.11
Scn11aQ9R053 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Elovl3-201ENSMUST00000043739 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Scn11aQ9R053 Hhatl-202ENSMUST00000163981 1744 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Chp1-201ENSMUST00000014221 2609 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Fbxl5-211ENSMUST00000196483 2814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm2420-202ENSMUST00000202224 2249 ntBASIC15.76■□□□□ 0.11
Scn11aQ9R053 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm11964-201ENSMUST00000120982 444 ntBASIC15.76■□□□□ 0.11
Scn11aQ9R053 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm10702-201ENSMUST00000098929 1268 ntBASIC15.76■□□□□ 0.11
Scn11aQ9R053 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Olfr1234-202ENSMUST00000111543 1386 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Ctu2-201ENSMUST00000116412 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Glrx3-203ENSMUST00000211496 3440 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Rnf180-201ENSMUST00000069686 1728 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm45332-201ENSMUST00000210508 1949 ntTSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Tmem254a-204ENSMUST00000185006 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.76■□□□□ 0.11
Scn11aQ9R053 Gm5639-201ENSMUST00000122305 2403 ntBASIC15.76■□□□□ 0.11
Scn11aQ9R053 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Scn11aQ9R053 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Synpo-206ENSMUST00000130360 5159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm25214-201ENSMUST00000104573 129 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 Nr4a2-203ENSMUST00000112629 3422 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm8959-201ENSMUST00000213150 571 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Arfgap1-205ENSMUST00000108862 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Apol6-201ENSMUST00000127957 2034 ntAPPRIS P4 TSL 2 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm15459-201ENSMUST00000117405 1941 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm8355-201ENSMUST00000177767 1941 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 4930444K16Rik-201ENSMUST00000220438 1767 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Zfp157-203ENSMUST00000110912 886 ntTSL 3 BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Gm25668-201ENSMUST00000157700 129 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC15.75■□□□□ 0.11
Scn11aQ9R053 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Scn11aQ9R053 Hnrnpf-203ENSMUST00000167182 2271 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Ttc8-202ENSMUST00000085109 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Fut8-201ENSMUST00000062804 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Samd4b-204ENSMUST00000208199 4391 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Scn11aQ9R053 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Il11ra1-203ENSMUST00000108041 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Gm42769-201ENSMUST00000198576 1659 ntBASIC15.74■□□□□ 0.11
Scn11aQ9R053 Cnppd1-201ENSMUST00000041213 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Scn11aQ9R053 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms