Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Atat1-201ENSMUST00000056034 1930 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Egfem1-201ENSMUST00000118531 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Sox9Q04887 Slc8b1-203ENSMUST00000111889 1624 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Neu2-203ENSMUST00000164128 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Fscn2-201ENSMUST00000026445 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Pias3-203ENSMUST00000107077 2695 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Gm16685-201ENSMUST00000181286 1592 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.93□□□□□ -0.18
Sox9Q04887 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 F2r-201ENSMUST00000059193 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Gm14130-201ENSMUST00000118417 987 ntBASIC13.93□□□□□ -0.18
Sox9Q04887 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Gm44064-201ENSMUST00000204964 1087 ntBASIC13.93□□□□□ -0.18
Sox9Q04887 Gm10109-202ENSMUST00000206890 1211 ntBASIC13.93□□□□□ -0.18
Sox9Q04887 Gm5781-201ENSMUST00000219792 443 ntBASIC13.93□□□□□ -0.18
Sox9Q04887 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.93□□□□□ -0.18
Sox9Q04887 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
Sox9Q04887 Srcin1-202ENSMUST00000107593 3733 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Pdlim3-201ENSMUST00000034053 1604 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 2210406O10Rik-202ENSMUST00000122882 1743 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Sox9Q04887 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Sox9Q04887 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Sox9Q04887 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC13.92□□□□□ -0.18
Sox9Q04887 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Sgce-203ENSMUST00000101677 1656 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm10434-201ENSMUST00000101158 471 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm15770-201ENSMUST00000117498 584 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12616-201ENSMUST00000118594 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Nbdy-202ENSMUST00000149514 775 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
Sox9Q04887 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12624-201ENSMUST00000177615 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12621-201ENSMUST00000177760 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12615-201ENSMUST00000177970 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12622-201ENSMUST00000177975 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12627-201ENSMUST00000178412 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12625-201ENSMUST00000179122 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12614-201ENSMUST00000179586 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm12613-201ENSMUST00000180323 382 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm31256-201ENSMUST00000194705 506 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Gm13097-201ENSMUST00000210722 397 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 AC173210.1-201ENSMUST00000222341 1131 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.92□□□□□ -0.18
Sox9Q04887 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC13.92□□□□□ -0.18
Sox9Q04887 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Aip-202ENSMUST00000117831 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
Sox9Q04887 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC13.92□□□□□ -0.18
Sox9Q04887 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Sox9Q04887 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sox9Q04887 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sox9Q04887 Trp73-201ENSMUST00000097762 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sox9Q04887 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC13.91□□□□□ -0.18
Sox9Q04887 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sox9Q04887 Pycr1-201ENSMUST00000026133 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Sox9Q04887 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms